Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0410.Seq
         (914 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-P...    29   8.9  
AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-P...    29   8.9  
AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-P...    29   8.9  

>AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-PB,
           isoform B protein.
          Length = 1257

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 503 TGKPWALPNLIALQHIPLSPAGVIAKRPAPIRLPNSCA 616
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 26  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 63


>AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-PC,
           isoform C protein.
          Length = 1294

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 503 TGKPWALPNLIALQHIPLSPAGVIAKRPAPIRLPNSCA 616
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 63  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 100


>AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-PD,
           isoform D protein.
          Length = 1272

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 503 TGKPWALPNLIALQHIPLSPAGVIAKRPAPIRLPNSCA 616
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 41  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 78


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,943,424
Number of Sequences: 53049
Number of extensions: 700901
Number of successful extensions: 1884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4484945457
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)