Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0410.Seq
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U51994-5|AAA96067.2|  336|Caenorhabditis elegans Sapk/erk kinase...    28   8.1  
AB060731-1|BAB43977.2|  336|Caenorhabditis elegans MAP kinase ki...    28   8.1  
AB024087-1|BAC11708.1|  336|Caenorhabditis elegans SEK-1 protein.      28   8.1  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 191 PEFYVL*TVRECDSSQEILFGLIYFTTFATFHPLNLINGKQN 316
           P+  ++  +R+     ++ FGL YF+ F  FHP+ L +GK N
Sbjct: 142 PKRDIVGELRDAFKKTDVHFGL-YFSQFEWFHPMFLDDGKFN 182


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 541 AAHPPFASWRNSEEARTDSPSQQLRSLEWANGQIVSVKY 657
           ++H     W N+   RTDS   + R  EWAN  +++ KY
Sbjct: 81  SSHCAVEEWNNN---RTDSIPHEDRHKEWANQNLLNRKY 116


>U51994-5|AAA96067.2|  336|Caenorhabditis elegans Sapk/erk kinase
           protein 1 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 496 RRDWETLGVTQLNRLAAHPPFASWRNSEEARTDSPSQQLRSLEWANGQIVSVKYFVK 666
           R D  +LG+T +       P+A+W+   E       +    L   +G  V  +YFVK
Sbjct: 233 RADVWSLGITIIEIAVGTHPYANWKTPFEQLKQVVKEPPPKLPMESGFSVDCQYFVK 289


>AB060731-1|BAB43977.2|  336|Caenorhabditis elegans MAP kinase
           kinase SEK-1 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 496 RRDWETLGVTQLNRLAAHPPFASWRNSEEARTDSPSQQLRSLEWANGQIVSVKYFVK 666
           R D  +LG+T +       P+A+W+   E       +    L   +G  V  +YFVK
Sbjct: 233 RADVWSLGITIIEIAVGTHPYANWKTPFEQLKQVVKEPPPKLPMESGFSVDCQYFVK 289


>AB024087-1|BAC11708.1|  336|Caenorhabditis elegans SEK-1 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 496 RRDWETLGVTQLNRLAAHPPFASWRNSEEARTDSPSQQLRSLEWANGQIVSVKYFVK 666
           R D  +LG+T +       P+A+W+   E       +    L   +G  V  +YFVK
Sbjct: 233 RADVWSLGITIIEIAVGTHPYANWKTPFEQLKQVVKEPPPKLPMESGFSVDCQYFVK 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,235
Number of Sequences: 27780
Number of extensions: 354194
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)