Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0410.Seq
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20040.1 68415.m02342 protein kinase, putative similar to pro...    29   3.2  
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ...    29   4.3  
At2g16365.2 68415.m06033 F-box family protein contains Pfam:PF00...    28   7.5  
At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00...    28   7.5  
At1g15280.2 68414.m01829 glycine-rich protein                          28   9.9  
At1g15280.1 68414.m01828 glycine-rich protein                          28   9.9  

>At2g20040.1 68415.m02342 protein kinase, putative similar to
           protein kinase [Homo sapiens] gi|1052737|emb|CAA59733
          Length = 261

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 502 DWETLGVTQLNRLAAHPPFASWRNSE 579
           DW  LGV     L    PF SWR SE
Sbjct: 127 DWWALGVLIYYMLEGEMPFGSWRESE 152


>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
           protein similar to SP|P48809 Heterogeneous nuclear
           ribonucleoprotein 27C (hnRNP 48) {Drosophila
           melanogaster}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           non-consensus TA donor splice site at exon 6
          Length = 379

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 816 RGPPTSKGAKNRFFQGRMXHXREXXTLIKFFG 911
           RG PT++G  N+ F GR+        L  +FG
Sbjct: 230 RGEPTTRGIGNKIFVGRLPQEASVDDLRDYFG 261


>At2g16365.2 68415.m06033 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 455

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +1

Query: 547 HPPFASWRNSEEARTDSPSQQLRSLEWANGQIVSVKYFVKIRVKFLLNQLI--FNPLGRN 720
           HP    W   +   TD P+ Q  S E  + +    K +  I    L+ + +   NP G  
Sbjct: 382 HPWIQRWCKKKTTSTDQPTGQEASFEPESHKEFEKKQYPSIAAMALMGKALSGLNPYGLR 441

Query: 721 RQNPLL 738
           + N L+
Sbjct: 442 KTNSLM 447


>At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 778

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +1

Query: 547 HPPFASWRNSEEARTDSPSQQLRSLEWANGQIVSVKYFVKIRVKFLLNQLI--FNPLGRN 720
           HP    W   +   TD P+ Q  S E  + +    K +  I    L+ + +   NP G  
Sbjct: 382 HPWIQRWCKKKTTSTDQPTGQEASFEPESHKEFEKKQYPSIAAMALMGKALSGLNPYGLR 441

Query: 721 RQNPLL 738
           + N L+
Sbjct: 442 KTNSLM 447


>At1g15280.2 68414.m01829 glycine-rich protein
          Length = 585

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 855 KNGFSPLWTLEAHVSLNRGXLGPKTGTNTNP 763
           K+G+SP+WT +   S ++G   P  G    P
Sbjct: 324 KSGYSPVWTAKTLQSTSQGRGAPAAGNTFYP 354


>At1g15280.1 68414.m01828 glycine-rich protein
          Length = 584

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 855 KNGFSPLWTLEAHVSLNRGXLGPKTGTNTNP 763
           K+G+SP+WT +   S ++G   P  G    P
Sbjct: 323 KSGYSPVWTAKTLQSTSQGRGAPAAGNTFYP 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,922
Number of Sequences: 28952
Number of extensions: 331098
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)