Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0409.Seq
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   3.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.6  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   6.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 179 IYFSCIDQMRVLSSFQIQCMLIFLSILLLV*GKFEVKEYFYCLSYTCYIRFS-HGLLFNK 355
           + F C +  R+   + +        + LL  G F V   FYC     +I F+ H LL   
Sbjct: 46  LVFKCYNLRRIYYFYCVSITFNVHLLFLLCSGYFTVHLLFYC----PFIIFTVHFLLCTY 101

Query: 356 HFQFYF 373
           +F + F
Sbjct: 102 YFYYAF 107



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 198 IKCVFYLVFKFSVCLFFYRYCY 263
           I  +FY V    +C++++ Y +
Sbjct: 224 IHLLFYCVLIILLCIYYFYYAF 245


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 531 YNYKSFVHN*YYNT*HLKREHYLQILN 451
           YNY +     YYN  H   E+Y+   N
Sbjct: 350 YNYPNPQQQYYYNKNHPNSENYINHQN 376


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 213 YLVFKFSVCLFFYRYCY 263
           +++  FS+C+  + YCY
Sbjct: 239 FVLSTFSICITQFYYCY 255


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 293 YFYCLSYTCYIRFSHGLLFNK 355
           Y +C S + Y  F  G+L N+
Sbjct: 72  YLFCASLSFYKAFKIGILLNQ 92


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 531 YNYKSFVHN*YYNT*HLKREHYLQILN 451
           YNY +     YYN  H   E+Y+   N
Sbjct: 298 YNYPNPQQQYYYNKNHPNSENYINHQN 324


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 121 RSARVATERSCFNKILMVNYIFFLYRSNACS 213
           R   V  +R   +K L++NYI  L     CS
Sbjct: 37  RYDNVDVDRILHSKRLLLNYINCLLEKGPCS 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,371
Number of Sequences: 336
Number of extensions: 2342
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)