Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0408.Seq
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    26   4.5  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   7.9  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -3

Query: 307 ATKDYRLS*SDRLHLINIMKTQSHSSRLL----ENH 212
           ++KDYRL+ S+ +   N+++ +   SRLL    ENH
Sbjct: 614 SSKDYRLTESEGIAAFNVLQYKGIPSRLLVFEDENH 649


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 434 YTLAQTQASGLEVDEVPIELDLIKGT------IYGFVVNYYFVISLGIGY 303
           +T+ +   S ++VD  P EL   +GT      + G +++YYF+ S   GY
Sbjct: 176 FTIEEYILSFIQVD--PSELVAYEGTYGVFFVLLGMIISYYFIGSTTAGY 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,418
Number of Sequences: 5004
Number of extensions: 38979
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)