Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0408.Seq
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0064 + 542101-542291,542391-542453,542559-542675,542763-54...    31   0.89 

>06_01_0064 +
           542101-542291,542391-542453,542559-542675,542763-542892,
           543010-543168,543839-543990,544313-544436,544629-544669,
           545512-545757,546010-546126,546683-547097,548698-548849,
           548960-549104
          Length = 683

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = -2

Query: 452 SGFNYYYTLAQTQASGLEVDEVPIELDLIKGTIYGFVVNYYFVISLGIGYQRLSFKLIRQ 273
           + F   ++  Q  A  L +    I +  +KG I    V Y  V++ G GY  L++ + ++
Sbjct: 545 TAFMSLFSCLQAGALALSIQRSSISIWALKGKIEIATVVYCGVVASGFGYLMLTYCVEKR 604

Query: 272 TPSDKYNENAESQLTIAGESLI*CRENNY 186
            P      +  SQ+ +AG  L    E  Y
Sbjct: 605 GPVFTAAFSPLSQIFVAGIDLFILHEPLY 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,694
Number of Sequences: 37544
Number of extensions: 212289
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)