Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0408.Seq
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 161 WLCYLKSFYNYSRGIR*VILQQS*AVTLRFHYIYQ 265
           WL +L  FY+  RG++  IL  +  +  R H + Q
Sbjct: 202 WLSFLDGFYSLPRGVQMQILMSTWHLRARLHRLSQ 236


>Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical
           protein F58G1.7 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 449 GFNYYYTLAQTQASGLEVDEVPIEL-DLIKGTIYGFVVNYYFVIS 318
           G   YY +   Q+ G+ V      L D++   + GF VN+Y + S
Sbjct: 201 GIFLYYAVQDVQSFGILVPVENFRLSDILSSLMVGFTVNFYLLNS 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,503,356
Number of Sequences: 27780
Number of extensions: 207365
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)