Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0408.Seq
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put...    28   6.9  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   9.1  

>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase, gi|2129635; contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 843

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -2

Query: 542 VRDVNFLEESNSHTCTFPDAEQLINSRSRKSGFNYYYTLAQTQASG 405
           V D +F+E   S +  F    QL N RS   G    YTL   Q  G
Sbjct: 54  VSDSSFVETGVSKSIPFTAQRQLQNLRSFPEGSRNCYTLIPIQGKG 99


>At2g45540.1 68415.m05663 WD-40 repeat family protein /
           beige-related contains Pfam PF02138: Beige/BEACH domain;
           contains Pfam PF00400: WD domain, G-beta repeat (3
           copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 59  RKGPLHLVHCFLPVCW 12
           RK  LH  H F P CW
Sbjct: 478 RKSSLHFTHAFKPQCW 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,586,077
Number of Sequences: 28952
Number of extensions: 186718
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)