Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0407.Seq
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0093 - 11063514-11064755,11065364-11065483,11066459-11066785     29   5.3  
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801...    29   7.0  
01_06_0181 - 27262425-27263337,27263452-27263633                       29   7.0  

>01_02_0093 - 11063514-11064755,11065364-11065483,11066459-11066785
          Length = 562

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 233 LTILNHKWNTLKVDFQNLMD--ILGVRRPLPKTKTDDSTNDTFDD 105
           L+ +N  WN +K +FQ + +   LG+ + L K   DD     ++D
Sbjct: 354 LSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYED 398


>01_07_0054 -
           40779336-40779599,40779734-40779848,40779998-40780181,
           40780322-40780393,40780485-40780611,40780830-40781011,
           40781099-40781249
          Length = 364

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 21  LTLWDVNNANKTF*NSFFFKLGSIFFRPIVKGVIS--TIVCLRFRKRSPNTQYIHKI 185
           +TL ++++A + F N     +G   F  + KG++   TIV ++ R   P+ ++IH++
Sbjct: 58  MTLEELSSATRNFSNVNL--IGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEV 112


>01_06_0181 - 27262425-27263337,27263452-27263633
          Length = 364

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 758 NWWFXTVYKLXXTFTAIESVKNSPLRTTVMWP 663
           +WW   V+ L  TFT  ES++ +P    ++ P
Sbjct: 239 SWWLRRVFGLTATFTEEESIELNPWLKDILRP 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,308,323
Number of Sequences: 37544
Number of extensions: 392041
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)