Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0407.Seq
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35918| Best HMM Match : Equine_IAV_S2 (HMM E-Value=0.27)            32   0.76 

>SB_35918| Best HMM Match : Equine_IAV_S2 (HMM E-Value=0.27)
          Length = 111

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -3

Query: 311 YGMGYLL*GTVSYRTALPNV*IHYTILTILNHKWNTLKVDFQNLMDILGVRRPLPKTKTD 132
           YG+ ++L G  S  T  PNV   + +  IL+H + T    F+N+  +L +R    + + +
Sbjct: 13  YGVTWILLGESSEETLTPNVWKQFMVRCILDH-YPTYPFSFENVTFLLRIRVSSTRKREN 71

Query: 131 D 129
           D
Sbjct: 72  D 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,365,085
Number of Sequences: 59808
Number of extensions: 489392
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)