Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0406.Seq
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1093 + 8627731-8627889,8627934-8627996,8628671-8628721           33   0.14 
01_07_0082 - 40965947-40967023                                         28   4.0  

>01_01_1093 + 8627731-8627889,8627934-8627996,8628671-8628721
          Length = 90

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 106 IYRYLIVALLVKGWSGPIQALVTLLWPEHVLYIG 5
           +Y Y    LLV  WSG IQ L   +W +H++ IG
Sbjct: 34  LYNYWKSLLLVLVWSGMIQDLQAGMWIDHIVMIG 67


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 29  PEQGYEGLYGTRPSFHQQGYDQIPIDSMQGLEIGSGFGMDMDIGXAEG 172
           P+ GY G YG  P     GY Q  +   +    G G G  + +G A G
Sbjct: 282 PQAGYGGGYGYPPQAGYGGYQQQAVKPAKKNNFGMGLGAGL-LGGALG 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,551
Number of Sequences: 37544
Number of extensions: 198548
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)