Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0406.Seq
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)        27   7.2  
SB_53657| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-19)                 27   9.5  
SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45)             27   9.5  
SB_28457| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 11  IQDMLGPEQGYEGLYGTRPSFHQQGYDQ 94
           +Q  LG ++ +EG  GT   FH  G+ Q
Sbjct: 155 LQRKLGKKETHEGYIGTHTRFHAWGFTQ 182


>SB_53657| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-19)
          Length = 317

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 103 YRYLIVALLVKGWSGPIQALVTLLWPEHVLYI 8
           Y  +IV  +++ W+G     +T  W E VLY+
Sbjct: 249 YLPVIVIFIIRAWNGRDYLRLTTQWLEFVLYM 280


>SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45)
          Length = 311

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 324 NSSSSNKTV*SQNLLILRESVLKA*YVKNLLLI-MFANFFTC 446
           N SSSN ++   +++I  ES+  A +   L+++ + AN F C
Sbjct: 2   NQSSSNLSLPGNHVIITTESITAALFTCILIILTLTANLFVC 43


>SB_28457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 344 NCIISKLTNFTGKCFKGLICKKFTINHV 427
           N  I+++TN T KC    +  KFT+N +
Sbjct: 5   NTCIARMTNCTAKCAFAHLTLKFTLNRL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,690
Number of Sequences: 59808
Number of extensions: 227277
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)