Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0402.Seq
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   154   1e-38
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   7.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   7.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  154 bits (374), Expect = 1e-38
 Identities = 79/155 (50%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
 Frame = +3

Query: 210 KNRQTREHLLVFFTNKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 389
           K +   E  L     KE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 390 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP* 563
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG    + HT P         V  
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTV 166

Query: 564 QSG*FXXXXXXXXXXRQFPKKLLQMAGVQDCYTSA 668
           +                  K+ LQ+AG++DCYT +
Sbjct: 167 RL--VPAPRGAGLVAAPVTKRFLQLAGIEDCYTQS 199



 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 29/40 (72%), Positives = 35/40 (87%)
 Frame = +2

Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVS 619
           G  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV+
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVT 183



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +1

Query: 151 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 259 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 369
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 148 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 23
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 335 LFLYRHDLKNLIIQGRAEEEINDLEFFIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 162
           L +Y   L+NL+ QG+A E +N ++            +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 244 SLPIKNSRSLISSSARP*MMRFLRSCLYRNK 336
           ++ +K SR+    S  P MMRF+  C++  K
Sbjct: 34  TIVLKRSRNAQGFSLEPIMMRFIELCVHLRK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,993
Number of Sequences: 5004
Number of extensions: 68553
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)