Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0402.Seq
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 158 6e-39
07_01_0756 + 5819367-5820038,5820847-5821005 152 3e-37
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 45 7e-05
08_01_0784 + 7600691-7601055,7601530-7601765,7601896-7602068,760... 29 3.6
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.7
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 4.7
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 29 6.2
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 8.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 158 bits (383), Expect = 6e-39
Identities = 88/166 (53%), Positives = 108/166 (65%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVA
Sbjct: 73 KEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 189
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG++D +TS+ L F + + KTY +L
Sbjct: 190 ARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFD-CLMKTYGFL 234
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 192
Score = 57.6 bits (133), Expect = 1e-08
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = +1
Query: 151 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 152 bits (369), Expect = 3e-37
Identities = 86/166 (51%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVA
Sbjct: 76 KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 192
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
PKK+LQ AG++D +TS+ L F + + KTY +L
Sbjct: 193 AHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFD-CLMKTYGFL 237
Score = 74.9 bits (176), Expect = 7e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHV 195
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/36 (63%), Positives = 32/36 (88%)
Frame = +1
Query: 151 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 476
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 477 LPV 485
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 45.2 bits (102), Expect = 7e-05
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 369 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNK*ESHTPSLARSP 545
FV +GD + HI LGVKC+K AT + GAIILA R K + + +A
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAEGATRETISRKPHTVSCKVADKY 59
Query: 546 ASVVP*QSG*FXXXXXXXXXXRQFPKKLLQMAGVQDCYTSA 668
SV + PKK+L+ AG++D +TS+
Sbjct: 60 GSVTVRM---MLPPMGSSVVATRVPKKVLKFAGIEDVFTSS 97
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 515 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
KPHTV CKV K GSVTVR++ P G+ +V+ V
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRV 80
>08_01_0784 +
7600691-7601055,7601530-7601765,7601896-7602068,
7602344-7602430,7602538-7602605,7602732-7602849,
7602983-7603042,7603135-7603257,7603377-7603448
Length = 433
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 672 TKLTCSNPVHQPSEEAS*ETGADTIPVPRGAGISRTVTEPHLPVT 538
T S VH E S G D VP+ GI +T+T P P+T
Sbjct: 351 TTFNISLVVHGTVTEGSSVVGIDPYAVPKSMGIFQTITSPK-PIT 394
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 431 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 315
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = -2
Query: 283 RKKSMISNSLLVKKTSKCSR---VCRFFLREQDGRVW*QEPTLSGLPCRAHDHGRDHDRV 113
R++++++ + L+ C +C R D ++ L C AH G D
Sbjct: 1006 RRRAIVTLTKLIPTVQLCITRLLICLSVARNNDDL---RKDAAEALCCLAHALGEDFTIF 1062
Query: 112 HEDRHGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 5
H L + +R R+ + +RL +R PL+++ L
Sbjct: 1063 VSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENL 1098
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 505 TNRKATHRPLQGHRQVWFRNSPADSCPSW 591
T K H L G + W+ N PA+S SW
Sbjct: 240 TKAKVIHLALDGIARFWYFNLPANSIYSW 268
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 106 DRHGLYLHRVIRIRRENRHVHRLEQRPP 23
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,472,236
Number of Sequences: 37544
Number of extensions: 500179
Number of successful extensions: 1359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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