Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0402.Seq
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   161   4e-40
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  161 bits (392), Expect = 4e-40
 Identities = 94/166 (56%), Positives = 108/166 (65%), Gaps = 2/166 (1%)
 Frame = +3

Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
           KEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK*E-SHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
           TAIRGAI+ AKL+V+PVRRGYWGNK    HT P       + V  +              
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRL--IPAPRGTGIVS 202

Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
              PKKLL MAG++DCYT+A      L  F       A+ +TY+YL
Sbjct: 203 APVPKKLLHMAGIEDCYTAAKGSTATLGNFA-KATYAALQRTYSYL 247



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +2

Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
           G +IG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPV
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPV 205



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +1

Query: 154 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 374 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 288
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 374 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 288
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 635 DGWCTGLLHVSFVVQLAPLEILLKPHY 715
           +GWC  L    +    APL  LL P Y
Sbjct: 851 NGWCNNLKFPEYANSFAPLRHLLPPQY 877


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 635 DGWCTGLLHVSFVVQLAPLEILLKPHY 715
           +GWC  L    +    APL  LL P Y
Sbjct: 851 NGWCNNLKFPEYANSFAPLRHLLPPQY 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,594,191
Number of Sequences: 27780
Number of extensions: 407620
Number of successful extensions: 1120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)