Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0402.Seq
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.38 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   8.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 183 QTRPSCSRRKNRQTREHLLVFFTNKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 359
           +T PS   +  R+  EH L  F N ++  + +FL    N        ++K T   Q  R
Sbjct: 192 ETFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFNFRTDTAGVIKKLTEDTQERR 250



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 243 KQVNALEFVDFSFANKTAEFGDRNPLFLVF 154
           + +++ + V++     T   GD  P+FL F
Sbjct: 355 QDISSPDAVEYGIIGPTTCMGDHKPVFLEF 384


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 KNRQTREHLLVFFT 251
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 KNRQTREHLLVFFT 251
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 KNRQTREHLLVFFT 251
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 KNRQTREHLLVFFT 251
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 635 LKKLLRKLAQTQYQYHEGQESAGLLRNHTCR*PCK 531
           L KL ++   T   + E  E  G +R+H     CK
Sbjct: 102 LPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = -2

Query: 610 RRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLLPQ*PLRTGRTDSLARIIAPRMAVA 431
           R   TS  R   +      TL G   R+G+ LS   P        T++L  +    M++ 
Sbjct: 533 RSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSIN 592

Query: 430 TSLLHF 413
            + +H+
Sbjct: 593 QAAIHY 598


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 391 TVILVWV*SAARKSPL 438
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 162 ERVGSCHQTRPSCSRRKNRQTRE 230
           +   S +    SCSR +NR+ RE
Sbjct: 225 QHTSSRYSRERSCSRDRNREYRE 247


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 533 CKVTGKCGSVTVRLIPAPRGT 595
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 174 SCHQTRP-SCSRRKNRQTRE 230
           S H +R  SCSR +NR+ +E
Sbjct: 228 SSHYSRERSCSRDRNREYKE 247


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 542 TGKCGSVTVRLIPAPRGTGIVSAPVS*EASSDGWCTGL 655
           +GK       +  A + + IVS+P S      G C GL
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSPDSARHQRIGGCNGL 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,154
Number of Sequences: 438
Number of extensions: 4952
Number of successful extensions: 55
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)