Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0402.Seq
(851 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 170 9e-43
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 170 1e-42
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 169 2e-42
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 169 2e-42
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 169 2e-42
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 169 2e-42
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.97
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.0
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 3.9
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.9
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 6.9
At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containi... 28 6.9
At3g63100.1 68416.m07087 glycine-rich protein 28 9.1
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 9.1
At3g01450.1 68416.m00069 expressed protein 28 9.1
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 9.1
At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containi... 28 9.1
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 170 bits (414), Expect = 9e-43
Identities = 91/166 (54%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+P+RRGYWGNK + HT P V +
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 191
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG+ D +TS+ L F + + KTY +L
Sbjct: 192 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFD-CLQKTYGFL 236
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 194
Score = 58.4 bits (135), Expect = 6e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 170 bits (413), Expect = 1e-42
Identities = 92/166 (55%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 200
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG+ D +TS+ L F + + KTY +L
Sbjct: 201 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFD-CLQKTYGFL 245
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 203
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++WVPVTKLGRLV G I ++E IYL SLP+K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 169 bits (411), Expect = 2e-42
Identities = 92/166 (55%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 199
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG+ D +TS+ L F + + KTY +L
Sbjct: 200 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFD-CLQKTYGFL 244
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 169 bits (411), Expect = 2e-42
Identities = 92/166 (55%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 199
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG+ D +TS+ L F + + KTY +L
Sbjct: 200 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFD-CLQKTYGFL 244
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 169 bits (411), Expect = 2e-42
Identities = 92/166 (55%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 199
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG+ D +TS+ L F + + KTY +L
Sbjct: 200 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFD-CLQKTYGFL 244
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 169 bits (411), Expect = 2e-42
Identities = 92/166 (55%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-*ESHT-PSLARSPASVVP*QSG*FXXXXXXXXXX 608
TAIRGAIILAKLSV+PVRRGYWGNK + HT P V +
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPRGSGIVA 199
Query: 609 RQFPKKLLQMAGVQDCYTSASWFNWHLWKFC*SHITLAIAKTYAYL 746
+ PKK+LQ AG+ D +TS+ L F + + KTY +L
Sbjct: 200 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFD-CLQKTYGFL 244
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/39 (82%), Positives = 37/39 (94%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 616
G +IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 300 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 479
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 480 PV 485
V
Sbjct: 209 QV 210
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 346 PARVCFCTGMILRTSSFRDGPRKKSMISNSLLVKKTSK 233
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -2
Query: 517 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 338
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 337 VCFCTGMILRTSSFR 293
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 142 HDHGRDHDRVHEDRHGLYLH 83
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 366 AFVAIGDNNGHIGLGVKCSKE 428
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 549 LPVTLQGTVCGFPICYPSNLF 487
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR-repeats Pfam profile:
PF01535
Length = 577
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = +1
Query: 493 VTGVTNRKATHRPLQGHRQVWFRNSPADSCPSWYWYCVCASFLRSFFRWLVYRIATRQLR 672
V T + HR LQG S D C YW +S + L + + +L
Sbjct: 8 VVSSTTSRFVHRNLQGKGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHSMKLD 67
Query: 673 GSTGTFGNFAKATLRLPLP 729
+ G FG K+ PLP
Sbjct: 68 DAIGLFGGMVKSR---PLP 83
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 136 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 44
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 142 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 38
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 517 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 338
L LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 337 VCF 329
CF
Sbjct: 222 TCF 224
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 521 HTVPCKVTGKCGSVTVRL 574
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/79 (27%), Positives = 29/79 (36%)
Frame = +1
Query: 493 VTGVTNRKATHRPLQGHRQVWFRNSPADSCPSWYWYCVCASFLRSFFRWLVYRIATRQLR 672
V T + HR LQG S D C YW +S + L + +L
Sbjct: 8 VVSSTTSRIVHRNLQGKGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHDMKLD 67
Query: 673 GSTGTFGNFAKATLRLPLP 729
+ G FG K+ PLP
Sbjct: 68 DAIGLFGGMVKSR---PLP 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,682
Number of Sequences: 28952
Number of extensions: 383556
Number of successful extensions: 1050
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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