Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0401.Seq
         (898 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    26   0.46 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   7.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.9  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 541 FFCRKKKQ*INKMYSMLIYETVNDDERDTS 630
           F C+   +   K Y++LI+E  + DER  S
Sbjct: 80  FICKYCNRQFTKSYNLLIHERTHTDERPYS 109


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 555 FSTKKSCQ*LYACLKDKPCMSQCKP 481
           F   + C   Y C+  KP    C+P
Sbjct: 482 FMPHELCDKYYRCVHGKPTEFACRP 506


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 563 CFFFRQKNPASSYMLV 516
           CFF   K PA S+ L+
Sbjct: 154 CFFKSSKKPAFSHFLI 169


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 563 CFFFRQKNPASSYMLV 516
           CFF   K PA S+ L+
Sbjct: 154 CFFKSSKKPAFSHFLI 169


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 563 CFFFRQKNPASSYMLV 516
           CFF   K PA S+ L+
Sbjct: 154 CFFKSSKKPAFSHFLI 169


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 563 CFFFRQKNPASSYMLV 516
           CFF   K PA S+ L+
Sbjct: 154 CFFKSSKKPAFSHFLI 169


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 550 RKKKQ*INKMYSMLIYETVNDDERDTSERSRK 645
           RKK     ++Y +   ++ ND+E   S +SRK
Sbjct: 24  RKKLSKHQQIYGIWADDSDNDEEERPSFKSRK 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,441
Number of Sequences: 336
Number of extensions: 3594
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)