Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0401.Seq
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.078
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       32   0.72 
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       32   0.72 
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 31   0.96 
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +2

Query: 119 DVVAVSQAPSPESNPDSPLPVTTM 190
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 128 AVSQAPSPESNPDSPLPVTTM 190
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.078
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 129 PFLRLPLRNRTLIPRYP 179
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 541 ILPVVICLSQR*AMHVSV 488
           ILPVVICLSQR ++HV V
Sbjct: 154 ILPVVICLSQRLSLHVKV 171


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 541 ILPVVICLSQR*AMHVSV 488
           ILPVVICLSQR ++HV V
Sbjct: 130 ILPVVICLSQRLSLHVKV 147


>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1122

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = -3

Query: 584 EYILFIYCFFFRQKNPASSYMLVSKISHACLSASRIKAIPRMAQYISFGS 435
           +++++  C      +PA  +++V+  + +CL+A+ I +IP+   Y +  S
Sbjct: 56  DFLVYALCSTLLSSHPACRFVVVTLHTLSCLAAASINSIPQQVGYRALAS 105


>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 113 SLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLTMRSAKVIQI 286
           S  VV  + A +    P  P+ VTT V A  T E+     + +A+P+L  + +K + +
Sbjct: 120 SSPVVTTAVASAASLKPSKPIVVTTAVAALPTPETSVAVSIPNAAPLLMPQPSKDVHL 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,527,551
Number of Sequences: 59808
Number of extensions: 468483
Number of successful extensions: 1254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)