Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0401.Seq
         (898 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    33   1.4  
AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple ...    31   5.7  
AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2...    31   5.7  
AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1...    31   5.7  
AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.     31   5.7  

>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 56   YFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 199
            + ++ P    S  F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5621 WMTTPPVEETSSGFSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


>AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple
            domains 3 protein.
          Length = 3501

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 52   SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 189
            SL    T   R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 1250 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1297


>AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2
            protein.
          Length = 3667

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 52   SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 189
            SL    T   R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 1351 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1398


>AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1
            protein.
          Length = 3707

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 52   SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 189
            SL    T   R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 1391 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 1438


>AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.
          Length = 2977

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 52  SLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG--IEP*FPVTRDNH 189
           SL    T   R W    P+    CG RF G  SG  + P +P   DN+
Sbjct: 731 SLLKCMTGERRAWDYPLPSCIAECGGRFKGESSGRILSPGYPFPYDNN 778


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,121,626
Number of Sequences: 237096
Number of extensions: 2216262
Number of successful extensions: 5476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5476
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)