Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0398.Seq
         (843 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    41   0.045
UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep: Lipo...    40   0.10 
UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2 transc...    33   6.8  

>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 40.7 bits (91), Expect = 0.045
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 390 APYGIAAPYGIAAPYTAYGA-YGVAPYG 470
           APYG  APYG  APY  YGA YG  PYG
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMPYG 108



 Score = 37.9 bits (84), Expect = 0.32
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 390 APYGIAAPYGIAAPYTAYGA-YGV-APYG 470
           APYG  APYG  APY  YGA YG  APYG
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPYG 103



 Score = 35.5 bits (78), Expect = 1.7
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 396 YGIAAPYGIAAPYTAYGA-YGV-APYGLG 476
           YG  APYG  APY  YGA YG  APYG G
Sbjct: 72  YGYGAPYGYGAPY-GYGAPYGYGAPYGYG 99


>UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep:
           Lipocalin-2 - Lonomia obliqua (Moth)
          Length = 53

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 177 EGHARAAEAVVQHNTEAVRQAAEASR 254
           + HARA EA VQ+NT+A RQ AEA+R
Sbjct: 16  QDHARAVEAAVQYNTDATRQVAEANR 41


>UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2
           transcription factor related, locus 6; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to NK2 transcription
           factor related, locus 6 - Canis familiaris
          Length = 342

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 411 PYGI-AAPYTAYGAYGVAPYGLG 476
           PYG  AAPY+ YG Y  AP+G G
Sbjct: 274 PYGAPAAPYSCYGGYAGAPFGAG 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,729,023
Number of Sequences: 1657284
Number of extensions: 8468042
Number of successful extensions: 29851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29686
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)