Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0398.Seq
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0809 - 20725858-20725950,20726375-20726545,20726895-207271...    29   3.5  
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     28   8.1  
08_01_0301 + 2488810-2489400                                           28   8.1  

>10_08_0809 -
           20725858-20725950,20726375-20726545,20726895-20727101,
           20727208-20727879
          Length = 380

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 229 SARPPKPPADSRNRLLERRR 288
           S RPP+P A S+N + ERRR
Sbjct: 185 SCRPPQPGAPSKNLMAERRR 204


>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 8/14 (57%), Positives = 14/14 (100%)
 Frame = +1

Query: 214 IILKPSARPPKPPA 255
           ++++PS+RPP+PPA
Sbjct: 288 VVMRPSSRPPQPPA 301


>08_01_0301 + 2488810-2489400
          Length = 196

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 407 GDAIGGSDQGRGEVGSPHGGGG 342
           GDA+ GS  G    G P GGGG
Sbjct: 99  GDALFGSLDGAAAAGEPGGGGG 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,102,935
Number of Sequences: 37544
Number of extensions: 253685
Number of successful extensions: 1556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)