Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0397.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.7  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   3.0  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.0  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   9.3  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = -3

Query: 689  QCPGAEPKPLPTAKGLGQRLDSETYDDYLNTLKNSKDLPVLNEF---LNFLERKFTTLET 519
            Q PG+      TA           ++ YLNT+ +   +   N F     F ++    +ET
Sbjct: 842  QAPGSHDASPDTALYFRDAYIKRLWEKYLNTVDDKDSVDAYNRFPFHSYFGDKSKRPIET 901

Query: 518  ALKSQTTGYRNIIFSKLDTINNQLQVSRNIIIMR 417
              K     Y   ++ +L+ +  QL+  R   ++R
Sbjct: 902  YNKDNFFDYATKLYGELEYMFQQLEEIRPFGLLR 935


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 531 NPRNSPEESDNGLPKHNIFQAGHHQQSTSGLQKHN-YNAYNKSRNYNLNDNRPIAKTMHA 355
           NP +S  ES++     NI  +      T     HN  ++Y    + N N +RP +   H+
Sbjct: 255 NPSSSRRESESPANSPNITSSAG---MTHAQPTHNPTSSYGNGASTNYNASRPPSNHPHS 311

Query: 354 SNF 346
           SN+
Sbjct: 312 SNY 314


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = -2

Query: 528 PRNSPEESDNGLPKHNIFQAGHHQQSTSGLQKHNYNAYNKSRNYNLNDNRPIAKTMHASN 349
           P+ S E+S +  P H+   +  H  S  G  KH+Y   +  ++++           H + 
Sbjct: 237 PQTS-EDSSSQAPHHS--SSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQRHNNG 293

Query: 348 FNCPLCNNQHG 316
           F   + NN  G
Sbjct: 294 FYRNIANNIQG 304


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 578 LPVLNEFLNFLER--KFTTLETALKSQTTGYRNIIFSKLDTI 459
           LP+ + FL++  R  K +  ++A+KS    YR++   K+D++
Sbjct: 146 LPLQSSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSL 187


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 513 EESDNGLPKHNIFQA 469
           E S+NGLP +N+F A
Sbjct: 373 EHSENGLPSYNVFPA 387


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 44  WYDKRIFWYYSNFS 85
           WYD++ + YY NF+
Sbjct: 319 WYDQQAYGYYQNFT 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,266
Number of Sequences: 5004
Number of extensions: 56636
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)