Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0397.Seq
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0079 + 10429217-10429444,10430058-10430303,10430701-104307...    32   0.59 
04_04_1262 + 32200823-32201190,32201311-32201818,32201927-322020...    31   1.4  

>10_06_0079 +
           10429217-10429444,10430058-10430303,10430701-10430746,
           10430796-10431000,10432114-10432225
          Length = 278

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 671 PKPLPTAKGLG--QRLDSETYDDYLNTLKNSKDLPVLNEFLNFLERKFTTLE 522
           P  +   KGL   + +D E  DDYL      + LP L E    +E+++ TLE
Sbjct: 162 PSHVMQPKGLSSEEEVDDEVMDDYLFKSITKESLPHLCELFEKIEQQYATLE 213


>04_04_1262 +
           32200823-32201190,32201311-32201818,32201927-32202031,
           32202222-32202287,32202471-32202536,32202698-32202751,
           32202895-32203041
          Length = 437

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 504 DNGLPKHNIFQAGHHQQSTSGLQKHNYN 421
           +NG   H   Q GHH  S S L  H+ N
Sbjct: 124 NNGAGLHEFLQDGHHDMSASSLMNHSSN 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,567
Number of Sequences: 37544
Number of extensions: 335213
Number of successful extensions: 924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)