Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0397.Seq
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               32   0.60 
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_54036| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_5868| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  29   5.6  
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)                  28   7.4  
SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                28   9.8  
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_21451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_5118| Best HMM Match : zf-C4_Topoisom (HMM E-Value=3.5)             28   9.8  

>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 683  PGAEPKPLPTAKGLGQRLDSETYDDYLNTLKNSKDL 576
            P  EP  LP A  L  RLD  + +DY  + + S+DL
Sbjct: 1245 PPLEPLTLPPAPMLAHRLDGTSLEDYNRSPRRSRDL 1280


>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 531 NPRNSPEESDNGLPKHNIFQAGHHQQSTSGLQKHNYNAYNKSRNY--NLNDNRPIAKTMH 358
           N  N+     N    +NI    ++  S + ++KH   AY K  +Y  N+N N  I  T  
Sbjct: 22  NNHNNGHNITNNNNNNNIIINNNNDNSKNNIKKHK--AYQKHGHYQNNININSEIKDTKD 79

Query: 357 ASNFNCPLCNNQH 319
           + N N  + NN +
Sbjct: 80  SINNNNNIINNDN 92


>SB_54036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -2

Query: 531 NPRNSPEESDNGLPKHNIFQAGHHQQSTSGLQKHNYNAYNKSRNYNLNDNRPIAKTMHAS 352
           N  N+   ++N   K+N     ++  + +    +N N  N + N N N+N  I    + +
Sbjct: 20  NNNNNNNNNNNNNNKNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKNNNNNN 79

Query: 351 NFNCPLCNNQH 319
           N N    NN +
Sbjct: 80  NNNNNKNNNNN 90


>SB_5868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 423 YNYVSGDLKLIVDGVQLGKYYVSVARCLT 509
           Y Y SG LKL +DGV + + Y+      T
Sbjct: 161 YEYTSGRLKLFLDGVTVREIYIGTFETAT 189


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 468 GHHQQSTSGLQKHNYNAYNKSRNYNLNDNRPIAKTMHASNFNCP 337
           GH  +S  GL+  + N    S N N  DNR + +T H ++F CP
Sbjct: 340 GHRVESKIGLEV-SMNRLENS-NVNQGDNRGVLETTHHTSF-CP 380


>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
          Length = 327

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -2

Query: 531 NPRNSPEESDNGLPK-HNIFQAGHHQQSTSGLQKHNYNAYNKSRNYNLNDNRPIAKTMHA 355
           N  NS   ++N     +N     ++  S S    +N N+ + S N   N N        +
Sbjct: 146 NSNNSTRNNNNSTSNSNNSTSNSNNSTSNSNNSSNNNNSTSNSNNSTSNSNNSTRNNNSS 205

Query: 354 SNFNCPLCNNQ 322
           SN N    NN+
Sbjct: 206 SNNNNSTINNK 216


>SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 531 NPRNSPEESDNGLPKHNIFQAGHHQ-QSTSGLQKHNYNAYNKSRNYNLNDN 382
           N RNS + S N    +N     ++  +S      +N N  NK+ N N N N
Sbjct: 17  NKRNSKDSSINKASYNNSINGNNNNNKSNDNKDSNNNNDRNKNNNNNNNSN 67


>SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 531 NPRNSPEESDNGLPKHNIFQA-GHHQQSTSGLQKHNYNAYNKSRNYNLNDN 382
           N RNS + S+N    +N      ++ +S      +N N  NK  N N N++
Sbjct: 36  NKRNSKDSSNNKASDNNSINGNNNNNKSNDNKDSNNNNDRNKKNNNNNNNS 86


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 701 HGLQQCPGAEPKPLPTAKGLGQR 633
           H +  CPG E  P P  +GL  R
Sbjct: 775 HSIACCPGGEDSPYPEGRGLAVR 797


>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 438 QKHNYNAYNKSRNYNLNDNRPIAKTMHASNFN 343
           + HN+N Y++ +  +LN N   +  MH  +F+
Sbjct: 207 KSHNFNKYDRGQIDDLNANYDFSSLMHYGSFS 238


>SB_21451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 125 HRCGYAPIQIFNILKNLNNTKRFVY 51
           H C    +++FN+L   NN K  VY
Sbjct: 219 HYCAQCEVEVFNLLFVTNNRKHLVY 243


>SB_5118| Best HMM Match : zf-C4_Topoisom (HMM E-Value=3.5)
          Length = 425

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 701 HGLQQCPGAEPKPLPTAKGLGQR 633
           H +  CPG E  P P  +GL  R
Sbjct: 119 HSIACCPGGEDSPYPEGRGLAVR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,301,296
Number of Sequences: 59808
Number of extensions: 406986
Number of successful extensions: 1481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)