Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0397.Seq
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 611 DYLNTLKNSKDLPVLNEFLNFLERKFTTLETALKSQTTGYRNIIFSKLDTINNQLQVSRN 432
           D  N L+N ++L  L+  +NF+E+K+  L    K   T      FS+ +T      +   
Sbjct: 589 DVKNALRNDRNL--LHFLVNFIEKKYPDLTKFKKDFATVTEAARFSQSETAAEIRNLEEA 646

Query: 431 IIIMR 417
           ++I+R
Sbjct: 647 LLIVR 651


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 662 LPTAKGLGQRLD---SETYDDYLNTLKNSKDLPVLNEFLNFLERKFTTLETALKS 507
           L  AKG   ++D   ++T  DY   L N KDLP +   +N LE K   L+  +K+
Sbjct: 725 LKAAKGFVDKIDVSKAKTMSDYGTPLANLKDLPDVK--INALE-KIKALDALIKA 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,003
Number of Sequences: 27780
Number of extensions: 322169
Number of successful extensions: 1095
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)