Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0397.Seq
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    29   2.6  
At4g18950.1 68417.m02792 ankyrin protein kinase, putative simila...    28   8.0  

>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -2

Query: 486 HNIFQAGHHQQSTSGLQKHNYNAYNKSRNYNLNDNRPIAKTMHASNFNCPLCNNQH 319
           H   Q+GHHQ       K   N YN  + ++    R   +   +     P  NNQ+
Sbjct: 159 HRQHQSGHHQNQNQAANKLKDNRYNSFKTWSGKLERQFTRKPASVEPEAPNRNNQN 214


>At4g18950.1 68417.m02792 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 459

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 293 YCHTVKTFLLECWHKK 246
           Y H +KT + ECWH+K
Sbjct: 384 YPHGLKTLIEECWHEK 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,999
Number of Sequences: 28952
Number of extensions: 281116
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)