Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0396.Seq
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.4  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   9.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 383 LSLNGLKKYQYVIKLWWGY 327
           L+   LK+Y   +KLWW +
Sbjct: 45  LAKGSLKQYTCELKLWWEF 63


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 143 FEQIRVLKAG*KCCLNISCME**NMISVLFC 235
           F+QI V+ +  K  LN  C E   +  + FC
Sbjct: 223 FDQIVVILSKVKSILNKKCCEKCGLKKIEFC 253


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 559 HQYHSGSHLH 530
           H +H+G H+H
Sbjct: 322 HHHHAGHHIH 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,525
Number of Sequences: 336
Number of extensions: 4064
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)