Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0396.Seq
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...    52   3e-07
08_01_0925 + 9117217-9117576,9117674-9117749,9118460-9118592,911...    29   2.7  

>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = +1

Query: 511 IVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFGPRCXVQGKVLTSLXPELP 687
           +V+LQGGE+   Y TD   +FRQE+YF ++ GVREPG ++G    V G+ +    P LP
Sbjct: 50  LVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG-FYGAIDIVSGQSIL-FSPRLP 106


>08_01_0925 +
           9117217-9117576,9117674-9117749,9118460-9118592,
           9118684-9118795,9119121-9119180,9119425-9119516,
           9119628-9119697,9119776-9119880
          Length = 335

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 310 VLIWPKISYTKSPPPFNHYSEF*KP 236
           V +W    Y  +PPP+NHY+ +  P
Sbjct: 183 VSMWGTPGYIAAPPPYNHYAAYSVP 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,840,144
Number of Sequences: 37544
Number of extensions: 420444
Number of successful extensions: 731
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)