Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0396.Seq
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)                 50   2e-06
SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   4.8  
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_14687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32)                28   8.4  

>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
          Length = 198

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/63 (46%), Positives = 35/63 (55%)
 Frame = +1

Query: 502 KWKIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFGPRCXVQGKVLTSLXPE 681
           K  IVVL GGE    Y TD   VFRQE++F W  GV E  C FG      GK +  + P+
Sbjct: 21  KGAIVVLLGGEQNTRYCTDTDVVFRQESFFHWTFGVLEADC-FGAVEVDTGKSILFI-PK 78

Query: 682 LPE 690
           LP+
Sbjct: 79  LPQ 81


>SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 567 ILYISIIVVHIFTSLQNHYFPLLSLFANL 481
           I YI IIVV I  SL N+YF L +++  +
Sbjct: 235 ICYIPIIVVSILRSLGNNYFLLTAIWMEM 263


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 478 SVCCEQRXRHFKSARAHRPRRCHV 407
           S+ C QR    +S RAHR +RCHV
Sbjct: 208 SITCPQRKAVSRS-RAHREKRCHV 230


>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 508 KIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREP 618
           K +V+  G       TD+ Y FRQ   F ++ G +EP
Sbjct: 127 KHLVIIPGNPNQFMSTDIPYPFRQNTDFLYLTGFQEP 163


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 511 IVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 600
           IV  + G+D N+++  V  +FRQ     WV
Sbjct: 150 IVATESGDDENNFEQFVSAIFRQHTTQLWV 179


>SB_14687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 458 SLFATNRRRLANKLKSGK*WF-CKEVKM 538
           SLF +NRRR+ +K+     W+ CK +K+
Sbjct: 140 SLFKSNRRRIHHKMLISAVWYKCKRLKL 167


>SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32)
          Length = 355

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 318 ICLISPPQFYHVLIFFQTIQR*NCLSLYHRTW 413
           +C+I+P      L+   TI+R  C  +YH+T+
Sbjct: 322 LCIITPSSHRSTLVTLCTIRRLPCHLMYHQTF 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,644,568
Number of Sequences: 59808
Number of extensions: 473459
Number of successful extensions: 1159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)