Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0396.Seq
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    43   2e-04
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    30   1.4  
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    29   3.2  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 511 IVVLQGGEDVNHYDTDVQYV-FRQEAYFTWVCGVREPGCY 627
           +V+LQGG + N Y+TD   + FRQE+YF W  GV E   Y
Sbjct: 37  VVLLQGGVEKNRYNTDAADLPFRQESYFFWTFGVNESEFY 76



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 419 TWSMGPGTLEVPXSLFATNRRRLANKLKS 505
           T+ +   T +VP  LF  NR RL + LKS
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKS 30


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 319 SVLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVVYGPWH---S*SAVIFVRNKPTKIS 489
           ++L P  S ITY YF +P++ K+    II H   ++  P     S S V +  + PT  S
Sbjct: 275 AILMPALSPITYLYFVRPYRQKV--KRIIRHPFKLLSRPHERATSNSGVFYSGDHPTHFS 332

Query: 490 K 492
           K
Sbjct: 333 K 333


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 600 NPCKIGFLSKYILY-ISIIVVHIFTSLQNHYFPLLSLF-ANLRRFVAN 463
           N   IG+   +++Y ISII V + T     ++P L LF +N+  ++ N
Sbjct: 113 NRSYIGYTMSFLIYLISIISVLVCTQFSTTFYPFLVLFMSNIISYIVN 160


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 319 SVLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVVYGPWH---S*SAVIFVRNKPTKIS 489
           S+L P  S ITY YF +P++ K+    II +   ++  P     S S V + R+ P   S
Sbjct: 275 SILMPALSPITYLYFVRPYRRKV--KSIIRNPFKILSRPHERATSNSGVFYSRDHPIHFS 332

Query: 490 K 492
           K
Sbjct: 333 K 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,719
Number of Sequences: 27780
Number of extensions: 377542
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)