Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0396.Seq
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...    52   5e-07
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    29   3.9  
At1g49650.1 68414.m05568 cell death associated protein-related s...    29   3.9  

>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = +1

Query: 514 VVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFGPRCXVQGKVLTSLXPELPE 690
           V+LQGGE+ N Y TD   +FRQE+YF ++ GVREP  ++G      GK +  + P LP+
Sbjct: 40  VLLQGGEEKNRYCTDHTELFRQESYFAYLFGVREPD-FYGAIDIGSGKSILFI-PRLPD 96


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 490 K*TQKWKIVVLQGGEDVNHYDTDVQY 567
           K  Q+W   V QGG D N  DTD  +
Sbjct: 364 KKAQRWLSKVAQGGSDANSVDTDEDF 389


>At1g49650.1 68414.m05568 cell death associated protein-related
           similar to PrMC3 [Pinus radiata] GI:5487873; weak
           similarity to cell death associated protein [Nicotiana
           tabacum] GI:7417008, hsr203J [Nicotiana tabacum]
           GI:22830761
          Length = 374

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 418 DVVYGPWHS*SAVIFVRNKPTKISK*TQKWKIVVLQGGEDVN 543
           DVVY P H+ S  +F+ +K T+++   +   ++   GG  +N
Sbjct: 100 DVVYSPGHNLSVRLFLPHKSTQLAAGNKLPLLIYFHGGAWIN 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,643
Number of Sequences: 28952
Number of extensions: 340578
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)