Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0395.Seq
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   2.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   6.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   8.2  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   8.2  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 706 ADLTKIYXNFNKILTLTIAIRHSARNCWEGRSVRASS 596
           ++L K+Y N N + +  I+++H+    W+  + R +S
Sbjct: 222 SNLLKLYTNSNTVTSSRISLKHTDPTKWQKHAKRTAS 258


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 866 PGKNGFSPXXPWXPPSFNRGTPCP 795
           PG NG  P  P  P  F  G P P
Sbjct: 504 PGHNGPMPMYPGMPTQFPAGGPAP 527


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 76  YKNKSEVPPFVSAEIIERSKSEARIKIS 159
           +K+  EVP FV   +++R      IK+S
Sbjct: 477 FKHTPEVPEFVQNRVLQRGDRHQSIKVS 504


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 82  SCIFLSTQESFSEILSVEIYE 20
           +CIF+ T  SF E+LS   YE
Sbjct: 135 TCIFIYTVSSFIELLSEPYYE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,451
Number of Sequences: 5004
Number of extensions: 60905
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)