Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0395.Seq
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    30   1.9  
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    30   1.9  
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    30   1.9  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   5.9  

>Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical
           protein M05D6.6 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 34  PTEFQKTILVWTKKYKNKSEVPPFVSAEIIERSKSEARI 150
           PT++Q+  LV TK Y + +++PP+V    + R     R+
Sbjct: 85  PTKWQRKFLVITKLYPSAADIPPYVHHGTMNRMHDRMRV 123


>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 261 SQVHLMNRFPSLSSSFPRQYCSKTCQSSKKH 169
           S  HL+N F S SS  P  YC   C+ +  H
Sbjct: 3   SPTHLLNNFESSSSQGPPSYCLICCEVADGH 33


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 261 SQVHLMNRFPSLSSSFPRQYCSKTCQSSKKH 169
           S  HL+N F S SS  P  YC   C+ +  H
Sbjct: 4   SPTHLLNNFESSSSQGPPSYCLICCEVADGH 34


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 261 SQVHLMNRFPSLSSSFPRQYCSKTCQSSKKH 169
           S  HL+N F S SS  P  YC   C+ +  H
Sbjct: 5   SPTHLLNNFESSSSQGPPSYCLICCEVADGH 35


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 88   SEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAAKRG 234
            S++ PF+   I +    + R   +NVLMLL+++   G    G+  A+ G
Sbjct: 1082 SDMKPFMMTLIKDYLSEDVRFSTNNVLMLLSSIHPIGTSF-GRVTAESG 1129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,756
Number of Sequences: 27780
Number of extensions: 353070
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)