Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0393.Seq
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    29   0.91 
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   4.8  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    27   4.8  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   6.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.4  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   8.5  

>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 209 PYRVPSLTHYLKNAQRRD*QAVHLTNACTPLFRQ 310
           P R P +   ++  +      VHL NAC+PLFR+
Sbjct: 119 PSREPLILRTIEALRGAKNATVHLYNACSPLFRE 152


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 29  ISSSSEKLAIVAKLPLKPSC-YSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYK 205
           + SSS     +   PL P+     +      +   SR DYP   +++  ++++H     +
Sbjct: 30  LGSSSRSTPQITGSPLDPNTPVKRLFFMRINIAQFSRWDYPYPREYIEELKKIHGVHHVE 89

Query: 206 RPYRVPSLTHYLKNAQRR 259
               VPS+    +N++R+
Sbjct: 90  ENRDVPSILENYRNSKRK 107


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 100 QPSNWNLNRF--IEDRLSTGTQVAHLS 174
           QP NW+   F  ++DR+  G+ ++HL+
Sbjct: 7   QPENWHEQDFRAVDDRVRGGSSISHLT 33


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 26  AISSSSEKLAIVAKLPLKPSCYSEISHPTGTLT 124
           AI+     L +  K P++  C + ++HP GT+T
Sbjct: 332 AIAYEGSILQLFIKQPVQGFCSNLLNHPEGTMT 364


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 71  PLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHYLKNA 250
           PL P   S +  PTGT++ +S   Y R+ +     ++LH    +  P    ++   LKN 
Sbjct: 182 PLPPPSSSSL--PTGTISTNSFCPYERKVQPEHVTKELHQLLQHNTPSPFDTIDLQLKNE 239

Query: 251 Q 253
           Q
Sbjct: 240 Q 240


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 731 KVKXXXXLXDRXSXXKKSLPNIQDAKQII*HGRKSRLIF 615
           K++    L  R S  KK + ++ D + +     KSRL+F
Sbjct: 59  KIEKIDSLLSRVSTVKKKMKHLHDCEALFIKQTKSRLLF 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,908
Number of Sequences: 5004
Number of extensions: 53710
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)