Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0393.Seq
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    29   5.1  
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    29   5.1  
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448     29   6.7  

>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +2

Query: 59  VAKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHY 238
           + ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  
Sbjct: 365 ITQIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRL 418

Query: 239 LKNA 250
           +K+A
Sbjct: 419 MKSA 422


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +2

Query: 59  VAKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHY 238
           + ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  
Sbjct: 335 ITQIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRL 388

Query: 239 LKNA 250
           +K+A
Sbjct: 389 MKSA 392


>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
          Length = 333

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 2   SFDNGITGAISS--SSEKLAIVAKLPLKPSCYSEISHPTGTLTGSSRTDY 145
           SF N  +  +SS  +SE  A+ + LPL     S ++ P+ ++ GS+  DY
Sbjct: 240 SFANCHSPVLSSECASEAAALSSSLPLSAVVGSAVTTPSTSIVGSAPADY 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,751
Number of Sequences: 37544
Number of extensions: 317645
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)