Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0393.Seq
         (906 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati...    29   4.2  
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati...    29   4.2  
At2g28315.1 68415.m03441 transporter-related low similarity to S...    29   4.2  
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP...    29   4.2  
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati...    29   4.2  

>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +2

Query: 59  VAKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHY 238
           + ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  
Sbjct: 325 ITQIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRL 378

Query: 239 LKNA 250
           +K+A
Sbjct: 379 MKSA 382


>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +2

Query: 59  VAKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHY 238
           + ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  
Sbjct: 325 ITQIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRL 378

Query: 239 LKNA 250
           +K+A
Sbjct: 379 MKSA 382


>At2g28315.1 68415.m03441 transporter-related low similarity to
           SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine
           transporter (UDP- GlcA/UDP-GalNAc transporter) {Homo
           sapiens}, SP|Q95YI5 UDP-sugar transporter UST74c (Fringe
           connection protein) {Drosophila melanogaster}
          Length = 240

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 589 FIKXYVTFLLNYNYIFTYSHIKFGVIICTIIIAVLRNYTTFL 464
           F+  Y+T L  ++  F YS I  G I  + +IAV  N++TFL
Sbjct: 101 FVDKYLTSLNVFS--FHYSPIVVGFITLSCLIAVSVNFSTFL 140


>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
           B subunit / vacuolar proton pump B subunit / V-ATPase 57
           kDa subunit identical to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}
          Length = 486

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +2

Query: 59  VAKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHY 238
           + ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  
Sbjct: 324 ITQIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRL 377

Query: 239 LKNA 250
           +K+A
Sbjct: 378 MKSA 381


>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           strong similarity to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 485

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +2

Query: 59  VAKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRXGYKRPYRVPSLTHY 238
           + ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  
Sbjct: 323 ITQIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRL 376

Query: 239 LKNA 250
           +K+A
Sbjct: 377 MKSA 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,685,241
Number of Sequences: 28952
Number of extensions: 266930
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)