Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0392.Seq
(781 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P75750 Cluster: Uncharacterized outer membrane usher pr... 148 2e-34
UniRef50_Q8CVL1 Cluster: Multidrug resistance protein mdtE precu... 62 2e-08
UniRef50_A0HC42 Cluster: Fimbrial biogenesis outer membrane ushe... 53 7e-06
UniRef50_P0AE07 Cluster: Acriflavine resistance protein A precur... 51 3e-05
UniRef50_A0KFM8 Cluster: Outer membrane usher protein; n=3; Gamm... 50 5e-05
UniRef50_Q6D8N0 Cluster: Putative outer membrane usher protein; ... 50 7e-05
UniRef50_A4W5W1 Cluster: Fimbrial biogenesis outer membrane ushe... 48 3e-04
UniRef50_Q6D805 Cluster: Acriflavine resistance protein A; n=5; ... 47 5e-04
UniRef50_P53514 Cluster: Outer membrane usher protein pmfC precu... 47 5e-04
UniRef50_A4G7M5 Cluster: Component of acridine efflux pump; n=25... 46 8e-04
UniRef50_Q13XH4 Cluster: RND efflux system, membrane fusion prot... 46 0.001
UniRef50_A1G0Z5 Cluster: Efflux transporter, RND family, MFP sub... 46 0.001
UniRef50_Q7VP25 Cluster: Probable fimbrial outer membrane usher ... 45 0.002
UniRef50_P07110 Cluster: Outer membrane usher protein papC precu... 45 0.002
UniRef50_A1TY63 Cluster: Efflux transporter, RND family, MFP sub... 44 0.006
UniRef50_Q2RSP5 Cluster: Secretion protein HlyD; n=2; Proteobact... 42 0.013
UniRef50_Q47216 Cluster: Pot. ORF2; n=1; Escherichia coli|Rep: P... 42 0.017
UniRef50_Q0VQY5 Cluster: Multidrug/solvent RND membrane fusion p... 42 0.017
UniRef50_Q2G910 Cluster: Secretion protein HlyD precursor; n=1; ... 41 0.040
UniRef50_Q2IXW7 Cluster: Secretion protein HlyD precursor; n=5; ... 40 0.053
UniRef50_P76655 Cluster: Uncharacterized outer membrane usher pr... 40 0.053
UniRef50_Q39DD2 Cluster: Secretion protein HlyD family; n=46; Ba... 40 0.070
UniRef50_P26949 Cluster: F1 capsule-anchoring protein precursor;... 40 0.070
UniRef50_Q397Q4 Cluster: Secretion protein, HlyD family; n=1; Bu... 40 0.092
UniRef50_Q2KXL8 Cluster: Multidrug efflux system inner membrane ... 40 0.092
UniRef50_Q12I50 Cluster: Secretion protein HlyD precursor; n=3; ... 39 0.12
UniRef50_Q6F8F7 Cluster: Acriflavine resistance protein A; n=4; ... 39 0.16
UniRef50_A5WDU8 Cluster: Efflux transporter, RND family, MFP sub... 39 0.16
UniRef50_A1B2Y3 Cluster: Efflux transporter, RND family, MFP sub... 39 0.16
UniRef50_P52477 Cluster: Multidrug resistance protein mexA precu... 39 0.16
UniRef50_A3VU93 Cluster: Secretion protein HlyD; n=1; Parvularcu... 38 0.21
UniRef50_Q93PU5 Cluster: Toluene efflux pump periplasmic linker ... 38 0.21
UniRef50_UPI00005FA14E Cluster: COG3188: P pilus assembly protei... 38 0.37
UniRef50_Q5PL29 Cluster: Probable outer membrane fimbrial usher ... 38 0.37
UniRef50_Q9WWZ9 Cluster: Toluene efflux pump periplasmic linker ... 38 0.37
UniRef50_A1W9Q2 Cluster: Efflux transporter, RND family, MFP sub... 37 0.49
UniRef50_Q5FT28 Cluster: Acriflavin resistance protein A; n=2; A... 36 0.86
UniRef50_Q48J51 Cluster: Multidrug resistance protein; n=2; Pseu... 36 0.86
UniRef50_Q67GM1 Cluster: AdeD; n=1; Acinetobacter sp. 4365|Rep: ... 36 0.86
UniRef50_Q1LQW6 Cluster: Fimbrial biogenesis outer membrane ushe... 36 0.86
UniRef50_Q0UUE2 Cluster: Protein CFT1; n=1; Phaeosphaeria nodoru... 36 0.86
UniRef50_Q15P88 Cluster: Efflux transporter, RND family, MFP sub... 36 1.1
UniRef50_A6CVJ9 Cluster: Efflux transporter, MFP subunit, AcrA/E... 36 1.1
UniRef50_A0J8K3 Cluster: Efflux transporter, RND family, MFP sub... 36 1.1
UniRef50_UPI00015C5728 Cluster: hypothetical protein CKO_02325; ... 36 1.5
UniRef50_Q97FD2 Cluster: Beta-lactamase class C domain (PBPX fam... 36 1.5
UniRef50_Q8FG26 Cluster: Putative uncharacterized protein; n=4; ... 36 1.5
UniRef50_Q0HDG7 Cluster: Efflux transporter, RND family, MFP sub... 36 1.5
UniRef50_A6PGR4 Cluster: Efflux transporter, RND family, MFP sub... 36 1.5
UniRef50_Q663X9 Cluster: Outer membrane fimbrial usher porin pre... 35 2.0
UniRef50_Q3RC30 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_Q214A8 Cluster: Secretion protein HlyD precursor; n=1; ... 35 2.0
UniRef50_Q1RA28 Cluster: Ribonucleoside diphosphage reductase 1,... 35 2.0
UniRef50_Q0W1R6 Cluster: Holliday junction resolvasome, helicase... 35 2.0
UniRef50_Q1DG49 Cluster: Efflux transporter, HAE1 family, MFP su... 35 2.6
UniRef50_A4JN64 Cluster: Efflux transporter, RND family, MFP sub... 35 2.6
UniRef50_Q6LFJ9 Cluster: Coatomer alpha subunit, putative; n=3; ... 35 2.6
UniRef50_Q7N8E3 Cluster: Similar to outer membrane usher protein... 34 3.5
UniRef50_Q4HLA5 Cluster: Type I restriction-modification enzyme,... 34 3.5
UniRef50_A6VTZ8 Cluster: Efflux transporter, RND family, MFP sub... 34 3.5
UniRef50_Q6AG92 Cluster: 1-phosphofructokinase; n=1; Leifsonia x... 34 4.6
UniRef50_Q39NU5 Cluster: Secretion protein HlyD family; n=17; Pr... 34 4.6
UniRef50_P77196 Cluster: Uncharacterized outer membrane usher pr... 34 4.6
UniRef50_Q8VAQ8 Cluster: Wsv343; n=5; Shrimp white spot syndrome... 33 6.1
UniRef50_Q8X3K9 Cluster: No significant matches; n=2; Escherichi... 33 6.1
UniRef50_Q0TL88 Cluster: Putative uncharacterized protein; n=3; ... 33 6.1
UniRef50_A7DK69 Cluster: Efflux transporter, RND family, MFP sub... 33 6.1
UniRef50_A0KMG2 Cluster: Acriflavin resistance protein A; n=2; A... 33 6.1
UniRef50_Q66F49 Cluster: Multidrug efflux protein, membrane fusi... 33 8.0
UniRef50_Q3JBC9 Cluster: Putative uncharacterized protein precur... 33 8.0
UniRef50_Q39GP9 Cluster: Fimbrial biogenesis outer membrane ushe... 33 8.0
UniRef50_O34574 Cluster: YefB protein; n=1; Bacillus subtilis|Re... 33 8.0
UniRef50_Q0FP23 Cluster: RND multidrug efflux membrane permease;... 33 8.0
UniRef50_P71305 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_P96115 Cluster: Holliday junction ATP-dependent DNA hel... 33 8.0
>UniRef50_P75750 Cluster: Uncharacterized outer membrane usher
protein ybgQ precursor; n=19; Enterobacteriaceae|Rep:
Uncharacterized outer membrane usher protein ybgQ
precursor - Escherichia coli (strain K12)
Length = 815
Score = 148 bits (358), Expect = 2e-34
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = -2
Query: 255 MAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQXKGDKT 76
MAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQ KGDKT
Sbjct: 20 MAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQKKGDKT 79
Query: 75 IPCINDSLVDK 43
IPCINDSLVDK
Sbjct: 80 IPCINDSLVDK 90
Score = 42.7 bits (96), Expect = 0.010
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -3
Query: 311 VNIYRLSFVSCLVMAMPCA 255
+NIYRLSFVSCLVMAMPCA
Sbjct: 1 MNIYRLSFVSCLVMAMPCA 19
>UniRef50_Q8CVL1 Cluster: Multidrug resistance protein mdtE
precursor; n=15; Enterobacteriaceae|Rep: Multidrug
resistance protein mdtE precursor - Escherichia coli O6
Length = 385
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/41 (75%), Positives = 32/41 (78%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEG 622
G + LRAI P LPGMYVTALVDEGSRQNVLLVPQEG
Sbjct: 268 GSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEG 308
>UniRef50_A0HC42 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=1; Comamonas testosteroni KF-1|Rep:
Fimbrial biogenesis outer membrane usher protein
precursor - Comamonas testosteroni KF-1
Length = 832
Score = 53.2 bits (122), Expect = 7e-06
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = -2
Query: 300 STLFCILPGHGDALRMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKI 121
+T+ C PG A VEFN ++LD RD ID+S KG + PG Y + V +N +
Sbjct: 20 ATVLCASPGF--AYADTVEFNADLLDVKDRDNIDLSAFSTKGYVLPGVYDLLVNINGQAL 77
Query: 120 SNGQKINWQXKGDK--TIPCINDSLVDKCRTSSXPLCRIR 7
+GDK + CI+ SLV+K + + +++
Sbjct: 78 KTVPVRFISPEGDKKESRVCIDQSLVEKLGLTEDAMVKVK 117
>UniRef50_P0AE07 Cluster: Acriflavine resistance protein A
precursor; n=78; Proteobacteria|Rep: Acriflavine
resistance protein A precursor - Escherichia coli
O157:H7
Length = 397
Score = 51.2 bits (117), Expect = 3e-05
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRAI P T LPGM+V A ++EG N +LVPQ+G + RTPRG
Sbjct: 272 GSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQG-VTRTPRG 319
>UniRef50_A0KFM8 Cluster: Outer membrane usher protein; n=3;
Gammaproteobacteria|Rep: Outer membrane usher protein -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 844
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = -2
Query: 246 EFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINW----QXKGDK 79
EFN++ LD R +ID+S ++G I PG+Y++ + VN NK+ QKI + KG
Sbjct: 38 EFNIDALDLDERTKIDLSQFADEGYILPGDYYLEIEVNKNKLPL-QKIPFYETDTGKGKG 96
Query: 78 TIPCINDSLVDKCRTSSXPLCRI 10
+ C+ ++ K + + +I
Sbjct: 97 GVACLPQEVIPKLALTDEAIAKI 119
>UniRef50_Q6D8N0 Cluster: Putative outer membrane usher protein;
n=1; Pectobacterium atrosepticum|Rep: Putative outer
membrane usher protein - Erwinia carotovora subsp.
atroseptica (Pectobacterium atrosepticum)
Length = 830
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = -2
Query: 252 AVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQXKGD--- 82
A EFN+NVLD R ID+S + + PG Y +S+ VN +I Q I++ +G+
Sbjct: 31 ATEFNINVLDVDERSDIDLSHFSDPEYVTPGTYLLSIKVNAREIQQ-QMISYLPEGNHRP 89
Query: 81 KTIPCINDSLVDK 43
+ C++ LVDK
Sbjct: 90 RPTACLSTELVDK 102
>UniRef50_A4W5W1 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=12; Enterobacteriaceae|Rep:
Fimbrial biogenesis outer membrane usher protein
precursor - Enterobacter sp. 638
Length = 835
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -2
Query: 249 VEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQXKGDK--T 76
++FN +VLD + ID+S ++G I PGEY + +N N++ + DK T
Sbjct: 39 IQFNTDVLDVKDKANIDLSQFSKRGYIMPGEYTFQIKINQNELEEQNISVYPSPLDKNNT 98
Query: 75 IPCINDSLVDK 43
I C++ +LV K
Sbjct: 99 IACLSPALVKK 109
>UniRef50_Q6D805 Cluster: Acriflavine resistance protein A; n=5;
Enterobacteriaceae|Rep: Acriflavine resistance protein A
- Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 397
Score = 47.2 bits (107), Expect = 5e-04
Identities = 27/57 (47%), Positives = 33/57 (57%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAV 574
G + LRAI P LPGM+V A +D G LLVPQ+G + R PRG+ AT V
Sbjct: 274 GSITLRAIFPNPQHNLLPGMFVRARLDSGVNPTALLVPQQG-ITRDPRGQ-ATAMVV 328
>UniRef50_P53514 Cluster: Outer membrane usher protein pmfC
precursor; n=1; Proteus mirabilis|Rep: Outer membrane
usher protein pmfC precursor - Proteus mirabilis
Length = 828
Score = 47.2 bits (107), Expect = 5e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -2
Query: 252 AVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQXKGDK-T 76
+VEFN+++LD RD +D+S I PG Y++ + +N Q IN+ D +
Sbjct: 33 SVEFNIHMLDAEDRDNVDLSRFSTSNYIIPGMYYLDIRLNGRDFPR-QNINYIEVADNHS 91
Query: 75 IPCINDSLVDK 43
+ CI+ +L+ K
Sbjct: 92 VACIDPTLLKK 102
>UniRef50_A4G7M5 Cluster: Component of acridine efflux pump; n=25;
Proteobacteria|Rep: Component of acridine efflux pump -
Herminiimonas arsenicoxydans
Length = 403
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G LR P +PGMYV AL+ G RQN +LVPQ+G + R P+G
Sbjct: 271 GSFALRVTVPNPDNILMPGMYVRALIGNGVRQNAILVPQQG-IARDPKG 318
>UniRef50_Q13XH4 Cluster: RND efflux system, membrane fusion
protein, CzcB subfamily; n=1; Burkholderia xenovorans
LB400|Rep: RND efflux system, membrane fusion protein,
CzcB subfamily - Burkholderia xenovorans (strain LB400)
Length = 403
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/49 (53%), Positives = 30/49 (61%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRA+ P T LPGMYVT V G ++NV LVPQE LQR G
Sbjct: 273 GAVNLRALVPNPQRTILPGMYVTLNVTLGQQRNVFLVPQES-LQRDTVG 320
>UniRef50_A1G0Z5 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=1; Stenotrophomonas maltophilia
R551-3|Rep: Efflux transporter, RND family, MFP subunit
precursor - Stenotrophomonas maltophilia R551-3
Length = 392
Score = 46.0 bits (104), Expect = 0.001
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRA P LPGMYV ALV +G+RQ LLVPQ + R+P G
Sbjct: 279 GSITLRARFPNPDGQLLPGMYVRALVGQGTRQQALLVPQAA-VDRSPEG 326
>UniRef50_Q7VP25 Cluster: Probable fimbrial outer membrane usher
protein; n=1; Haemophilus ducreyi|Rep: Probable fimbrial
outer membrane usher protein - Haemophilus ducreyi
Length = 833
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = -2
Query: 303 LSTLFCILPGHGDALRMA-VEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNN 127
L ++ +L +AL M +EFN + LD ++ I++ + PG Y + + VNNN
Sbjct: 14 LLSMLPLLMTSSNALAMQDIEFNTDTLDLEDKENINLGYFSRANYLMPGSYSLEIKVNNN 73
Query: 126 KISNGQKINWQXKGD--KTIPCINDSLVDK 43
+S + + + D ++ C++ L DK
Sbjct: 74 NLSEEEVVFLAPEDDPKDSVACLSPELTDK 103
>UniRef50_P07110 Cluster: Outer membrane usher protein papC
precursor; n=32; Enterobacteriaceae|Rep: Outer membrane
usher protein papC precursor - Escherichia coli (strain
K12)
Length = 836
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = -2
Query: 252 AVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKIS 118
AVEFN +VLD + + ID + E G + PG+Y + V VN IS
Sbjct: 27 AVEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIVNGQSIS 71
>UniRef50_A1TY63 Cluster: Efflux transporter, RND family, MFP
subunit; n=1; Marinobacter aquaeolei VT8|Rep: Efflux
transporter, RND family, MFP subunit - Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 417
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -2
Query: 732 LRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
+RA+ P LPGMYV + EG R+N LL PQ+G + R P+G
Sbjct: 285 VRAVFPNPDEDLLPGMYVRVRLSEGVRENALLAPQQG-VSRNPQG 328
>UniRef50_Q2RSP5 Cluster: Secretion protein HlyD; n=2;
Proteobacteria|Rep: Secretion protein HlyD -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 426
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMA 589
G + LRA P LPG++V A VD GSR+NV L+PQ + R G+ A
Sbjct: 300 GTVRLRATFPNPNRILLPGLFVRATVDFGSRENVFLIPQRAVV-RDASGKAA 350
>UniRef50_Q47216 Cluster: Pot. ORF2; n=1; Escherichia coli|Rep: Pot.
ORF2 - Escherichia coli
Length = 62
Score = 41.9 bits (94), Expect = 0.017
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -1
Query: 478 RVLPGLPEIPNRRSDKALAPHPTN 407
RVL GL PNRRSDKA PHPTN
Sbjct: 5 RVLSGLQTAPNRRSDKAFTPHPTN 28
>UniRef50_Q0VQY5 Cluster: Multidrug/solvent RND membrane fusion
protein, putative; n=5; Gammaproteobacteria|Rep:
Multidrug/solvent RND membrane fusion protein, putative
- Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573)
Length = 442
Score = 41.9 bits (94), Expect = 0.017
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G + LRA+ P LPGM+V + EG R++ +LVPQ+G + R P G+
Sbjct: 306 GSVTLRALFPNPDGELLPGMFVRGRLPEGQRKDAILVPQKG-ITRDPTGQ 354
>UniRef50_Q2G910 Cluster: Secretion protein HlyD precursor; n=1;
Novosphingobium aromaticivorans DSM 12444|Rep: Secretion
protein HlyD precursor - Novosphingobium aromaticivorans
(strain DSM 12444)
Length = 402
Score = 40.7 bits (91), Expect = 0.040
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G + +RA+ P LPG++V A V +G+ N +LVPQ + R PRGR
Sbjct: 277 GTITVRAVVPNPRGDLLPGLFVRARVGQGTVPNGILVPQAA-VSRDPRGR 325
>UniRef50_Q2IXW7 Cluster: Secretion protein HlyD precursor; n=5;
Alphaproteobacteria|Rep: Secretion protein HlyD
precursor - Rhodopseudomonas palustris (strain HaA2)
Length = 431
Score = 40.3 bits (90), Expect = 0.053
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAVE 571
G LRA P LPGMYV A++++G +N +VPQ + T +AT E
Sbjct: 286 GTFALRAQFPNPKRLLLPGMYVRAIIEQGIAENSFVVPQRAVTRNTKGEAVATIVTAE 343
>UniRef50_P76655 Cluster: Uncharacterized outer membrane usher
protein yqiG precursor; n=15; Escherichia coli|Rep:
Uncharacterized outer membrane usher protein yqiG
precursor - Escherichia coli (strain K12)
Length = 821
Score = 40.3 bits (90), Expect = 0.053
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = -2
Query: 270 GDALRMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQX 91
G A AVEFN ++++ R+ +++S + G + G+Y +S +NN + + W
Sbjct: 14 GCASAYAVEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINNKRTPIHLDLQWVL 73
Query: 90 KGDKTIPCI 64
++T C+
Sbjct: 74 IDNQTAVCV 82
>UniRef50_Q39DD2 Cluster: Secretion protein HlyD family; n=46;
Bacteria|Rep: Secretion protein HlyD family -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 425
Score = 39.9 bits (89), Expect = 0.070
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEG 622
G + +RA+ P LPGM+V A ++EG +N LVPQ G
Sbjct: 270 GSVTIRAVFPNPGRVLLPGMFVRARIEEGVNENAFLVPQIG 310
>UniRef50_P26949 Cluster: F1 capsule-anchoring protein precursor;
n=6; Yersinia pestis|Rep: F1 capsule-anchoring protein
precursor - Yersinia pestis
Length = 833
Score = 39.9 bits (89), Expect = 0.070
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = -2
Query: 252 AVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNG 112
A F+ +LD + + ID+SL + G+ PG YFV+V VN K+ +G
Sbjct: 23 AYTFDSTMLDTNSGESIDVSLFNQ-GLQLPGNYFVNVFVNGRKVDSG 68
>UniRef50_Q397Q4 Cluster: Secretion protein, HlyD family; n=1;
Burkholderia sp. 383|Rep: Secretion protein, HlyD family
- Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 386
Score = 39.5 bits (88), Expect = 0.092
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRT 607
G + LRA P LPGM+V +DEG +++ +LVPQ+G + T
Sbjct: 259 GSVTLRAQFPNPDHQILPGMFVRTKLDEGVKRDAILVPQQGITRDT 304
>UniRef50_Q2KXL8 Cluster: Multidrug efflux system inner membrane
protein precursor; n=5; Proteobacteria|Rep: Multidrug
efflux system inner membrane protein precursor -
Bordetella avium (strain 197N)
Length = 394
Score = 39.5 bits (88), Expect = 0.092
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRA P LPGMYV +DEG L+VPQ+ LQRT G
Sbjct: 270 GNVVLRAEVPNPDEILLPGMYVRVRLDEGVDDKALMVPQQA-LQRTADG 317
>UniRef50_Q12I50 Cluster: Secretion protein HlyD precursor; n=3;
Alteromonadales|Rep: Secretion protein HlyD precursor -
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 /
DSM 15013)
Length = 386
Score = 39.1 bits (87), Expect = 0.12
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRA P LPGMYV AL++ G N +LVPQ+ + R +G
Sbjct: 270 GSVTLRAEFPNPDALLLPGMYVRALINTGLDPNAILVPQKA-ITRNSKG 317
>UniRef50_Q6F8F7 Cluster: Acriflavine resistance protein A; n=4;
Acinetobacter|Rep: Acriflavine resistance protein A -
Acinetobacter sp. (strain ADP1)
Length = 421
Score = 38.7 bits (86), Expect = 0.16
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAVES 568
G + LRA+ P LPGMY TA + + N L+PQ + RTP G+ AT V +
Sbjct: 277 GTVTLRAVFPNPNHLLLPGMYATAQIAQAVIPNAYLIPQAA-VTRTPTGQ-ATAMVVNA 333
>UniRef50_A5WDU8 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=3; Psychrobacter|Rep: Efflux
transporter, RND family, MFP subunit precursor -
Psychrobacter sp. PRwf-1
Length = 469
Score = 38.7 bits (86), Expect = 0.16
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRAI LPGMYV A + +G N +L+PQ + RTP+G
Sbjct: 315 GAVTLRAIFKNDNYMLLPGMYVKARLIQGLINNAVLLPQSA-IMRTPKG 362
>UniRef50_A1B2Y3 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=9; Rhodobacteraceae|Rep: Efflux
transporter, RND family, MFP subunit precursor -
Paracoccus denitrificans (strain Pd 1222)
Length = 451
Score = 38.7 bits (86), Expect = 0.16
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -2
Query: 696 LPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
LPGMYV A+V + + +NV+L PQEG + R RG+
Sbjct: 285 LPGMYVQAVVQQATARNVILAPQEG-VTRDRRGQ 317
>UniRef50_P52477 Cluster: Multidrug resistance protein mexA
precursor; n=8; Gammaproteobacteria|Rep: Multidrug
resistance protein mexA precursor - Pseudomonas
aeruginosa
Length = 383
Score = 38.7 bits (86), Expect = 0.16
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEG 622
G + +RA+ P LPGM+V A + EG +Q +L PQ+G
Sbjct: 257 GSVTIRAVFPNPNNELLPGMFVHAQLQEGVKQKAILAPQQG 297
>UniRef50_A3VU93 Cluster: Secretion protein HlyD; n=1; Parvularcula
bermudensis HTCC2503|Rep: Secretion protein HlyD -
Parvularcula bermudensis HTCC2503
Length = 412
Score = 38.3 bits (85), Expect = 0.21
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRAI P LPG++V A + ++V+ VPQ+ L RTPRG
Sbjct: 285 GTVILRAIVPNPDRLLLPGLFVRATLPTAILEDVMAVPQQAVL-RTPRG 332
>UniRef50_Q93PU5 Cluster: Toluene efflux pump periplasmic linker
protein ttgG precursor; n=10; Proteobacteria|Rep:
Toluene efflux pump periplasmic linker protein ttgG
precursor - Pseudomonas putida
Length = 391
Score = 38.3 bits (85), Expect = 0.21
Identities = 26/69 (37%), Positives = 34/69 (49%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAVESL 565
G + LRA P LPGM+V AL+ EG + +LVPQ+ + TR V S+
Sbjct: 267 GSVTLRAEFPNPNRKLLPGMFVHALLKEGVQNAAILVPQQAISR--------DTRGVPSV 318
Query: 564 WHNAARNAV 538
W A N V
Sbjct: 319 WVMKADNTV 327
>UniRef50_UPI00005FA14E Cluster: COG3188: P pilus assembly protein,
porin PapC; n=3; Yersinia|Rep: COG3188: P pilus assembly
protein, porin PapC - Yersinia intermedia ATCC 29909
Length = 872
Score = 37.5 bits (83), Expect = 0.37
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = -2
Query: 252 AVEF-NLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQXKGDKT 76
AVEF N+ + + ID+S ++G + PG Y + +NN I N + + ++ + DK+
Sbjct: 52 AVEFDNIYLNTEHGGSGIDLSRFSKEGSVLPGTYRADIYLNNTLIGN-ENVEFKTRDDKS 110
Query: 75 I-PCINDSLV 49
+ C++ S++
Sbjct: 111 VHACLSSSVI 120
>UniRef50_Q5PL29 Cluster: Probable outer membrane fimbrial usher
protein; n=4; Salmonella|Rep: Probable outer membrane
fimbrial usher protein - Salmonella paratyphi-a
Length = 829
Score = 37.5 bits (83), Expect = 0.37
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -2
Query: 252 AVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKI 121
A EFN ++LD +D++ +G +APG Y + + +N+ +
Sbjct: 21 ATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPV 64
>UniRef50_Q9WWZ9 Cluster: Toluene efflux pump periplasmic linker
protein ttgA precursor; n=31; Proteobacteria|Rep:
Toluene efflux pump periplasmic linker protein ttgA
precursor - Pseudomonas putida
Length = 384
Score = 37.5 bits (83), Expect = 0.37
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEG 622
G + LRA+ P T LPGM+V A + G N +L PQ+G
Sbjct: 256 GSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQG 296
>UniRef50_A1W9Q2 Cluster: Efflux transporter, RND family, MFP
subunit; n=4; Comamonadaceae|Rep: Efflux transporter,
RND family, MFP subunit - Acidovorax sp. (strain JS42)
Length = 446
Score = 37.1 bits (82), Expect = 0.49
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G + LRA+ P +PGMYV AL+ G + LL+PQ+ + R GR
Sbjct: 303 GTVTLRAVVPNPDGLLMPGMYVQALLPTGLASDALLIPQQS-VHRDLTGR 351
>UniRef50_Q5FT28 Cluster: Acriflavin resistance protein A; n=2;
Alphaproteobacteria|Rep: Acriflavin resistance protein A
- Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 398
Score = 36.3 bits (80), Expect = 0.86
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQ 628
G L +RA+ P LPGM+V A + EG N LLVPQ
Sbjct: 282 GTLVMRAVFPNPDHLLLPGMFVHAHIQEGIDPNGLLVPQ 320
>UniRef50_Q48J51 Cluster: Multidrug resistance protein; n=2;
Pseudomonas syringae group|Rep: Multidrug resistance
protein - Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6)
Length = 402
Score = 36.3 bits (80), Expect = 0.86
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAVE 571
G + LRA LPGMYV A++++ QN +L+PQ+ + R+ G+ V+
Sbjct: 277 GTVTLRASFANPERLLLPGMYVVAVLEQAQDQNAILIPQKA-VSRSASGQTTVLLVVD 333
>UniRef50_Q67GM1 Cluster: AdeD; n=1; Acinetobacter sp. 4365|Rep:
AdeD - Acinetobacter sp. 4365
Length = 374
Score = 36.3 bits (80), Expect = 0.86
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRA P LPG+YV A + G+R N +L+PQ G L R G
Sbjct: 267 GSVTLRAAFPNPNNALLPGLYVRAELGTGTRPNSVLIPQ-GALFRDAEG 314
>UniRef50_Q1LQW6 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=1; Ralstonia metallidurans
CH34|Rep: Fimbrial biogenesis outer membrane usher
protein precursor - Ralstonia metallidurans (strain CH34
/ ATCC 43123 / DSM 2839)
Length = 852
Score = 36.3 bits (80), Expect = 0.86
Identities = 21/86 (24%), Positives = 45/86 (52%)
Frame = -2
Query: 300 STLFCILPGHGDALRMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKI 121
+ +F PG A AV+FN + L +S +D+S I+PG++ V + +N + +
Sbjct: 24 TAVFANEPGK-TATIAAVKFNSDFLKRSDGTSVDVSRFAFGNPISPGDHAVDIYLNGSWV 82
Query: 120 SNGQKINWQXKGDKTIPCINDSLVDK 43
+ + ++ + + PC++ SL+ +
Sbjct: 83 GR-ETVRFRSRDEVVGPCMDRSLITR 107
>UniRef50_Q0UUE2 Cluster: Protein CFT1; n=1; Phaeosphaeria
nodorum|Rep: Protein CFT1 - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 1375
Score = 36.3 bits (80), Expect = 0.86
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +3
Query: 450 GISGSPGKTRTASHQAYCQCGCGASXQSDLRHFWRRYAKVIPRPASSPYAHAVYAAKSLP 629
G+SG+P K+ T H + CQ G +D ++ P S+ Y H +AA+ +P
Sbjct: 914 GLSGNPVKSLTRFHTSSCQRGFAYLDSTDT-------LRISQLPPSTHYGHLGWAARRMP 966
Query: 630 AAPVIHSGGYLHP 668
+H+ Y HP
Sbjct: 967 MDAEVHALAY-HP 978
>UniRef50_Q15P88 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=2; Gammaproteobacteria|Rep: Efflux
transporter, RND family, MFP subunit precursor -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 404
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
G + LRA P LPGM+V V+E N +LVPQ+G + P G
Sbjct: 265 GAVTLRAEFPNPDGVLLPGMFVRTRVNEAVDDNAILVPQQG-VYHNPAG 312
>UniRef50_A6CVJ9 Cluster: Efflux transporter, MFP subunit, AcrA/E
family protein; n=1; Vibrio shilonii AK1|Rep: Efflux
transporter, MFP subunit, AcrA/E family protein - Vibrio
shilonii AK1
Length = 387
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAVESL 565
G L +RA +PG+YVTA+++ Q V+L+PQ +Q +GR T + E++
Sbjct: 272 GTLAVRAEFANTEHLIVPGLYVTAIIEAPRVQEVMLIPQRA-VQEDQQGRYVLTVSKENV 330
>UniRef50_A0J8K3 Cluster: Efflux transporter, RND family, MFP
subunit; n=3; Shewanella|Rep: Efflux transporter, RND
family, MFP subunit - Shewanella woodyi ATCC 51908
Length = 387
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G L +RA LPGM+VT +++ ++N LL+PQ +Q +GR
Sbjct: 269 GTLPIRATFKNENKLMLPGMFVTLIIESPVKENALLIPQAS-VQEDQQGR 317
>UniRef50_UPI00015C5728 Cluster: hypothetical protein CKO_02325;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_02325 - Citrobacter koseri ATCC BAA-895
Length = 242
Score = 35.5 bits (78), Expect = 1.5
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Frame = -2
Query: 228 LDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQ---KINWQXKGDKTI-PCIN 61
+D +++ D+S+ ++ APG+Y VS+ ++NNK+ K+ KG++++ PC +
Sbjct: 44 IDNPRQEKTDLSVYEKGPGQAPGKYQVSIFIDNNKVDTRDVTFKLQKDVKGNRSLQPCFS 103
>UniRef50_Q97FD2 Cluster: Beta-lactamase class C domain (PBPX
family) containing protein; n=3; Clostridium|Rep:
Beta-lactamase class C domain (PBPX family) containing
protein - Clostridium acetobutylicum
Length = 739
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -2
Query: 336 KIFIRYGHREYLSTLFCILPGHGDALRMAVEFNLNVLDKSMRDRIDISLLKEKGVI 169
K + G E+ + F +LP A+ + L+ D+ M +R+ ++ LKEKGVI
Sbjct: 378 KALCKGGDSEFYHSGFIVLPEQNMAMAVVSSGGLSTYDEVMAERVLLTALKEKGVI 433
>UniRef50_Q8FG26 Cluster: Putative uncharacterized protein; n=4;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli O6
Length = 52
Score = 35.5 bits (78), Expect = 1.5
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1
Query: 460 PEIPNRRSDKALAPHPTN 407
P PNRRSDKA PHPTN
Sbjct: 33 PTNPNRRSDKAFTPHPTN 50
>UniRef50_Q0HDG7 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=19; Gammaproteobacteria|Rep: Efflux
transporter, RND family, MFP subunit precursor -
Shewanella sp. (strain MR-4)
Length = 382
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G + LRA P LPGMYV A+++ G+ +LVPQ+ + R +G+
Sbjct: 270 GSVILRAEFPNPDGILLPGMYVRAVLNTGTDPQAILVPQKA-ISRNAKGQ 318
>UniRef50_A6PGR4 Cluster: Efflux transporter, RND family, MFP
subunit; n=1; Shewanella sediminis HAW-EB3|Rep: Efflux
transporter, RND family, MFP subunit - Shewanella
sediminis HAW-EB3
Length = 391
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G L +RA LPGM+VT +++ ++N LL+PQ +Q +GR
Sbjct: 269 GTLPIRATFKNGEKMMLPGMFVTLVIESPVKENALLIPQAA-VQEDQQGR 317
>UniRef50_Q663X9 Cluster: Outer membrane fimbrial usher porin
precursor; n=15; Yersinia|Rep: Outer membrane fimbrial
usher porin precursor - Yersinia pseudotuberculosis
Length = 832
Score = 35.1 bits (77), Expect = 2.0
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 249 VEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINW--QXKGDKT 76
V+FN N++D R ID+S + PG Y + + +++ + + + +G T
Sbjct: 34 VKFNTNIIDAKDRSNIDLSRFEVDDYTPPGNYLLDILIDDRLLPERYLVTYLAVDEGKST 93
Query: 75 IPCINDSLVD 46
C+ LV+
Sbjct: 94 KLCLTPDLVN 103
>UniRef50_Q3RC30 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Dixon|Rep: Putative uncharacterized
protein - Xylella fastidiosa Dixon
Length = 182
Score = 35.1 bits (77), Expect = 2.0
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +3
Query: 468 GKTRTASHQAYCQCGCGASXQSDLRHFWRRYAKVIPRPASSPYAHAVYAAKSLPAAPVIH 647
G T + H +C Q R R + V PRPA + A V+ A + H
Sbjct: 4 GVTEPSQHDVHCGAAGDGLPQLIKRRVERGFHVVQPRPAIA--ADIVHGAGQVDGKIHRH 61
Query: 648 SGGYLHP 668
+GGYLHP
Sbjct: 62 TGGYLHP 68
>UniRef50_Q214A8 Cluster: Secretion protein HlyD precursor; n=1;
Rhodopseudomonas palustris BisB18|Rep: Secretion protein
HlyD precursor - Rhodopseudomonas palustris (strain
BisB18)
Length = 388
Score = 35.1 bits (77), Expect = 2.0
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -2
Query: 696 LPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRG 598
LPGMYV A + G + N LLVPQ+ + R P G
Sbjct: 289 LPGMYVRARMPRGVKHNALLVPQQAVV-RDPAG 320
>UniRef50_Q1RA28 Cluster: Ribonucleoside diphosphage reductase 1,
beta subunit, B2; n=1; Escherichia coli UTI89|Rep:
Ribonucleoside diphosphage reductase 1, beta subunit, B2
- Escherichia coli (strain UTI89 / UPEC)
Length = 103
Score = 35.1 bits (77), Expect = 2.0
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 410 CRMRRERLIRPTVRYL-W*SW*DANSVASGILPVRMRREXPIRLTAFLAALCQSDST 577
CRMRRERLIRPTV SVASG RMRR+ P + C+ D T
Sbjct: 41 CRMRRERLIRPTVLCSDLVGLIRRVSVASG-TECRMRRKTPYPSYGSVLGSCRPDKT 96
>UniRef50_Q0W1R6 Cluster: Holliday junction resolvasome, helicase
subunit; n=1; uncultured methanogenic archaeon RC-I|Rep:
Holliday junction resolvasome, helicase subunit -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 35.1 bits (77), Expect = 2.0
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2
Query: 630 QEGFLQRTPRGRMATTRAVESL 565
Q GF+ RTPRGRMAT AVE L
Sbjct: 310 QIGFINRTPRGRMATPAAVEHL 331
>UniRef50_Q1DG49 Cluster: Efflux transporter, HAE1 family, MFP
subunit; n=1; Myxococcus xanthus DK 1622|Rep: Efflux
transporter, HAE1 family, MFP subunit - Myxococcus
xanthus (strain DK 1622)
Length = 378
Score = 34.7 bits (76), Expect = 2.6
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFL 616
G L +RA+ P LPGM+V A V G LLVPQ+ L
Sbjct: 265 GELTVRALVPNAQRKLLPGMFVKARVVLGEVAGALLVPQQAVL 307
>UniRef50_A4JN64 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=8; Proteobacteria|Rep: Efflux
transporter, RND family, MFP subunit precursor -
Burkholderia vietnamiensis (strain G4 / LMG 22486)
(Burkholderiacepacia (strain R1808))
Length = 427
Score = 34.7 bits (76), Expect = 2.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQ 628
G + LR+ P LPGM+V A ++EG + +LVPQ
Sbjct: 287 GSVTLRSTFPNPERELLPGMFVRARLEEGENDDAILVPQ 325
>UniRef50_Q6LFJ9 Cluster: Coatomer alpha subunit, putative; n=3;
Plasmodium|Rep: Coatomer alpha subunit, putative -
Plasmodium falciparum (isolate 3D7)
Length = 1537
Score = 34.7 bits (76), Expect = 2.6
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Frame = -2
Query: 285 ILPGHGDALRMAVEFNLNV-------LDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNN 127
IL GH + M EF+ N+ LDK++R DI LL+EK VI+ G++ S ++NNN
Sbjct: 130 ILTGHNHYV-MCAEFHPNLDYIISCSLDKTLRVW-DIKLLREKNVISKGDHLDS-SINNN 186
Query: 126 KISN 115
+N
Sbjct: 187 NNNN 190
>UniRef50_Q7N8E3 Cluster: Similar to outer membrane usher protein;
n=2; Photorhabdus luminescens subsp. laumondii|Rep:
Similar to outer membrane usher protein - Photorhabdus
luminescens subsp. laumondii
Length = 880
Score = 34.3 bits (75), Expect = 3.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 213 RDRIDISLLKEKGVIAPGEYFVSVAVNNNKISN 115
R +D+S + G +APG Y V V +N N++ +
Sbjct: 63 RSHVDLSAYENAGYVAPGRYLVDVYMNQNRVDS 95
>UniRef50_Q4HLA5 Cluster: Type I restriction-modification enzyme, S
subunit, EcoA family; n=2; Campylobacter|Rep: Type I
restriction-modification enzyme, S subunit, EcoA family
- Campylobacter lari RM2100
Length = 390
Score = 34.3 bits (75), Expect = 3.5
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = -2
Query: 339 HKIFIRYGHREYLSTLFCILPGHGDALRMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPG 160
H I+ E+ L C + G A+++++EF ++ + + ++ + V
Sbjct: 247 HNKLIKRAKPEFGDILICRIGTLGKAIKISLEFEFSIFVSLGLLKPKVKIISDYLVYFLN 306
Query: 159 EYFVSVAVNNNKISNG 112
YF+ +NNNK+ G
Sbjct: 307 SYFIEGWINNNKVGGG 322
>UniRef50_A6VTZ8 Cluster: Efflux transporter, RND family, MFP
subunit precursor; n=1; Marinomonas sp. MWYL1|Rep:
Efflux transporter, RND family, MFP subunit precursor -
Marinomonas sp. MWYL1
Length = 397
Score = 34.3 bits (75), Expect = 3.5
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEG 622
G + LRA P LPGM+V L+ E + LLVPQ+G
Sbjct: 269 GSVTLRAEFPNPDNLLLPGMFVRGLIHELTHNAALLVPQQG 309
>UniRef50_Q6AG92 Cluster: 1-phosphofructokinase; n=1; Leifsonia xyli
subsp. xyli|Rep: 1-phosphofructokinase - Leifsonia xyli
subsp. xyli
Length = 315
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 702 TCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATT 583
T +PG AL+ GSR ++L+ P G++ PR R+ +T
Sbjct: 215 TLVPGRVGAALITLGSRGSILVTPSGGYVAAAPRIRVQST 254
>UniRef50_Q39NU5 Cluster: Secretion protein HlyD family; n=17;
Proteobacteria|Rep: Secretion protein HlyD family -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 385
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQ 613
G + LR + LPGMYV A + G +N L VPQ+ ++
Sbjct: 268 GDVLLRVLVDNPKRELLPGMYVRARIPRGHYENALTVPQQAIVR 311
>UniRef50_P77196 Cluster: Uncharacterized outer membrane usher
protein yfcU precursor; n=40; Enterobacteriaceae|Rep:
Uncharacterized outer membrane usher protein yfcU
precursor - Escherichia coli (strain K12)
Length = 881
Score = 33.9 bits (74), Expect = 4.6
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 249 VEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQXKGD---K 79
++F+ L+ +ID+ +G + PG+Y + V +N ++ I W D K
Sbjct: 33 IQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDVSK 92
Query: 78 TIPCINDSLV 49
+ C+ LV
Sbjct: 93 SYACLTPELV 102
>UniRef50_Q8VAQ8 Cluster: Wsv343; n=5; Shrimp white spot syndrome
virus|Rep: Wsv343 - White spot syndrome virus (WSSV)
Length = 4180
Score = 33.5 bits (73), Expect = 6.1
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = -2
Query: 372 IILRINNSAAFHKIFIRYGHREYL--STLFCILPGHGDALRM---AVEFNLNVLDKSMRD 208
I+ I++ F KI + + +EY L DA+ AVE N + K RD
Sbjct: 1880 IVKVISDIENFFKICVPFSKKEYALYGVTETALSAGMDAIERWNKAVEEETNKIRKECRD 1939
Query: 207 RIDISLLKEKGVIAPGEYFVSVAVNNN 127
D + + +I PG+Y SV N
Sbjct: 1940 LTDTGSVYDMNIICPGDYMSSVGEGGN 1966
>UniRef50_Q8X3K9 Cluster: No significant matches; n=2; Escherichia
coli|Rep: No significant matches - Escherichia coli
O157:H7
Length = 45
Score = 33.5 bits (73), Expect = 6.1
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 349 TVIYSQYDEKAGQLIYR*THLSDAARAPYPTYGS 450
TV ++D+ + I +SDAARAPYPTYGS
Sbjct: 10 TVQACRHDKTHQRRIRHLRMVSDAARAPYPTYGS 43
>UniRef50_Q0TL88 Cluster: Putative uncharacterized protein; n=3;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Length = 69
Score = 33.5 bits (73), Expect = 6.1
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 362 LSMMKKQAS*SIAEHICRMRRERLIRPT 445
+ M+++ A+ H CRMRRERLIRPT
Sbjct: 16 VGMIRRVAAHLAPVHNCRMRRERLIRPT 43
>UniRef50_A7DK69 Cluster: Efflux transporter, RND family, MFP
subunit; n=3; Alphaproteobacteria|Rep: Efflux
transporter, RND family, MFP subunit - Methylobacterium
extorquens PA1
Length = 441
Score = 33.5 bits (73), Expect = 6.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G + LR P PGMYV A + +G + + VPQ+ +QRT G+
Sbjct: 291 GQVTLRVQFPNPHNELFPGMYVRARIKQGIDSDAIAVPQQA-IQRTSDGK 339
>UniRef50_A0KMG2 Cluster: Acriflavin resistance protein A; n=2;
Aeromonas|Rep: Acriflavin resistance protein A -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 399
Score = 33.5 bits (73), Expect = 6.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQ 613
G + RAI LPG +V +D G+R+N +LVP +Q
Sbjct: 277 GTIRARAIFDNKDGVLLPGQFVRMTIDLGTRKNAILVPPRAIVQ 320
>UniRef50_Q66F49 Cluster: Multidrug efflux protein, membrane fusion
(MFP) family precursor; n=9; Enterobacteriaceae|Rep:
Multidrug efflux protein, membrane fusion (MFP) family
precursor - Yersinia pseudotuberculosis
Length = 386
Score = 33.1 bits (72), Expect = 8.0
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEG 622
G + LRA P LPGM+V A V G +L PQ+G
Sbjct: 262 GAVTLRAKFPNPEHQLLPGMFVRASVRNGVNNTAILAPQQG 302
>UniRef50_Q3JBC9 Cluster: Putative uncharacterized protein
precursor; n=1; Nitrosococcus oceani ATCC 19707|Rep:
Putative uncharacterized protein precursor -
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Length = 541
Score = 33.1 bits (72), Expect = 8.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 411 VGCGASALSDLRFGISGSPGKTRTASHQAYCQCGCGASXQ--SDLRHFW 551
V G S+ + G SPG R + +YC+ G G + Q S RH+W
Sbjct: 486 VAAGYSSPQAVLTGWMNSPGHRRNILNASYCELGVGYAYQGRSTYRHYW 534
>UniRef50_Q39GP9 Cluster: Fimbrial biogenesis outer membrane usher
protein; n=21; Burkholderia|Rep: Fimbrial biogenesis
outer membrane usher protein - Burkholderia sp. (strain
383) (Burkholderia cepacia (strain ATCC 17760/ NCIB 9086
/ R18194))
Length = 828
Score = 33.1 bits (72), Expect = 8.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 252 AVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNN 130
A EFN + LD +D+S + PGEY + V VN+
Sbjct: 21 ATEFNSSFLDIDGTSNVDLSQFSQADFTLPGEYMLDVQVND 61
>UniRef50_O34574 Cluster: YefB protein; n=1; Bacillus subtilis|Rep:
YefB protein - Bacillus subtilis
Length = 300
Score = 33.1 bits (72), Expect = 8.0
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -2
Query: 339 HKIFIRYGHREYLSTLFCILPGHGDALRMAV-EFNLNVLDKSMRDRIDISLLKEKGVIAP 163
+KI++++ Y L + + + + E N + DK RD+ ++ + GVI+
Sbjct: 155 NKIYLKFSKENYFKELSEKALKYKEKIESKIIEINEKLNDKK-RDKSNLVISLANGVISK 213
Query: 162 GEYFVSVAVNNNKISNGQKINWQXKGDKTIPCINDSLVD 46
+Y +++ + N ISN + Q D I ++D
Sbjct: 214 EDYQLAINITNEDISNFETTLHQLSKDLEFQKIEKEIID 252
>UniRef50_Q0FP23 Cluster: RND multidrug efflux membrane permease;
n=1; Roseovarius sp. HTCC2601|Rep: RND multidrug efflux
membrane permease - Roseovarius sp. HTCC2601
Length = 401
Score = 33.1 bits (72), Expect = 8.0
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 744 GPLXLRAISPPXMVTCLPGMYVTALVDEGSRQNVLLVPQEGFLQRTPRGR 595
G + LRA P T LPGMYV V + R+ L+VP + L+R G+
Sbjct: 268 GQVTLRAEVPNPDGTLLPGMYVRVRVAQAVREAALVVPAQA-LRRDASGQ 316
>UniRef50_P71305 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 123
Score = 33.1 bits (72), Expect = 8.0
Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 404 HICRMRRERLIRPTVRYLW*SW*DANSVASGIL-PVRMRREXPIRLTAFLAALCQSD 571
H CRMRRERLIRPT D S ASGI RMRR IR T+ A +C+ D
Sbjct: 28 HHCRMRRERLIRPT-NGARICRPDKRS-ASGICHHCRMRRGRLIRPTSG-ARICRPD 81
>UniRef50_P96115 Cluster: Holliday junction ATP-dependent DNA
helicase ruvB; n=28; Bacteria|Rep: Holliday junction
ATP-dependent DNA helicase ruvB - Treponema pallidum
Length = 350
Score = 33.1 bits (72), Expect = 8.0
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -2
Query: 630 QEGFLQRTPRGRMATTRAVESL 565
Q G +QRTPRGRMAT RA L
Sbjct: 308 QIGLMQRTPRGRMATARAYAHL 329
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,858,667
Number of Sequences: 1657284
Number of extensions: 16920762
Number of successful extensions: 42471
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 40903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42437
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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