Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    27   4.0  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   7.0  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   7.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 561 AKVIPRPASSPYAHAVYAAKSLPAAPVIHSGGYLH-PLMP 677
           A  +P+P ++P    V +    PA PV+   G L+ P++P
Sbjct: 661 APSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVP 700


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 684 YVTALVDEGSRQNVLLVPQEGFLQRTPRGRMATTRAVESL 565
           ++  ++D+       LVP E ++  TP G M   +A+  L
Sbjct: 121 HILNVIDDSPVARASLVPYEDYIVGTPEGMMTGEKALSDL 160


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 439 SDKALAPHPTNVFSDRLAGLLFHHTENK 356
           SD    PHP+N F   L+  + HH  N+
Sbjct: 86  SDGLHVPHPSNRFDFALSIAVIHHFSNE 113


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 61  IDAWNGFVTLXLPVNFLPITDFVVIHRNANK 153
           IDAW   + L L  N LP   +V++H   N+
Sbjct: 581 IDAWERVLKLHLKRNQLPEIAYVILHCVGNE 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,630
Number of Sequences: 5004
Number of extensions: 65140
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)