Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1399 - 37033066-37033263,37033603-37033673,37033763-370339...    29   3.1  
05_01_0013 - 85732-86829                                               29   4.1  
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532     29   4.1  
09_06_0096 - 20840855-20841994                                         29   5.5  
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400...    28   7.2  
01_03_0044 - 11927272-11928516                                         28   7.2  
10_08_0948 + 21754985-21755290,21756042-21756297,21756845-217569...    28   9.6  

>01_06_1399 -
           37033066-37033263,37033603-37033673,37033763-37033910,
           37034407-37034504,37034748-37034864,37035025-37035103,
           37035179-37035298,37035465-37035587,37036016-37036058,
           37036157-37036470
          Length = 436

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 573 PRPASS-PYAHAVYAAKSLPAAPVIHSGGYLHPLMP*RTCQASKSPFXVGK 722
           PRP S   + HAV   + + A PV+     LHP +P      + S F V K
Sbjct: 59  PRPGSPLVWFHAVSLGEGMAALPVVRHCARLHPGLPILLTTTTLSSFEVMK 109


>05_01_0013 - 85732-86829
          Length = 365

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/71 (29%), Positives = 27/71 (38%)
 Frame = +1

Query: 343 GGTVIYSQYDEKAGQLIYR*THLSDAARAPYPTYGSVSLVVLVRREQRRIRHIASADAAR 522
           GG V+       AG+L Y          A         +   VRR +R+ R IA AD   
Sbjct: 11  GGVVVVGMNSGDAGELSYANNSDMQRTIAAATRKERQEMAAAVRRGRRQARAIAIADLGC 70

Query: 523 ATNPTYGISGG 555
           AT P   +  G
Sbjct: 71  ATGPNALLMAG 81


>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
          Length = 119

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 515 RREXPIRLTAFLAALCQSDSTARVVAIRPRGVRCKKPSCGTSNTFWRLPSSTNAV 679
           RR  P+ +   L A C+  S   V   R R     +   G +N  W LPS+T+AV
Sbjct: 40  RRSTPLPVCLALPAGCRHASEWMVHRARQRVGEGVRLDNGLANRDWYLPSTTHAV 94


>09_06_0096 - 20840855-20841994
          Length = 379

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -3

Query: 602 VGVWRRRGPWNHFGITPPEMP*VGLVARAASALAIC 495
           V V RRR P  H    PP +P  G +A AA+AL  C
Sbjct: 305 VPVVRRRRPTPHPDGAPPPVPHHGHLAAAAAALLPC 340


>08_02_1323 -
           26136015-26137876,26138300-26139229,26139922-26140068,
           26140139-26140360,26140513-26140555
          Length = 1067

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 288 CILPGHGDALRMAVEFNLNVLDK 220
           C++P HGD  R++ EF+ + ++K
Sbjct: 220 CLVPEHGDGARLSSEFSADEINK 242


>01_03_0044 - 11927272-11928516
          Length = 414

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 122 SVMGKKLTGKXRVTKPFHASMIHWSINVARARXRSAEFG 6
           S + K + G     +P HA +++W +   R R  +AE G
Sbjct: 222 SKLVKSVAGVDLPIQPLHALVLYWKVKPGRERELAAEAG 260


>10_08_0948 +
           21754985-21755290,21756042-21756297,21756845-21756999,
           21757077-21757349,21757582-21757776,21757867-21758058
          Length = 458

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 558 YAKVIP--RPASSPYAHAVYAAKSLPAAPVIHSGGY 659
           YA + P  RP+ S Y  + Y + SLP+   +  GGY
Sbjct: 409 YAGLDPVYRPSYSQYGSSTYPSSSLPSYSSMDGGGY 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,218,584
Number of Sequences: 37544
Number of extensions: 495428
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)