Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           31   1.0  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               29   4.2  
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   5.6  
SB_26004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)                    28   9.8  
SB_28583| Best HMM Match : C2 (HMM E-Value=2.7e-17)                    28   9.8  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       28   9.8  

>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 474 TRTASHQAYCQC--GCGASXQSDL--RHFWRRYAKVIPRPASSPYAHAVYAA-KSLPAAP 638
           T + +   Y QC   C A    D+  +H+W      +PR  SSP  H  Y+    LP+ P
Sbjct: 237 TMSVARPTYSQCTESCKAECNPDMAPQHWWSVEPNKVPRVPSSP-PHGTYSTLHGLPSPP 295

Query: 639 VIHSGGY 659
              +GGY
Sbjct: 296 --GAGGY 300


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 66  CMEWFCHPXFAS*FFAHY*FC 128
           C +WFCH  F   +F H  FC
Sbjct: 867 CHQWFCHQWFCHQWFCHQWFC 887


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 162  GEYFVSVAVNNNKIS---NGQKINWQXKGDKTIPCINDSLVDKCRTSSXP 22
            G Y  +V   N  I+     + IN Q    KT  C+NDS+   C + + P
Sbjct: 1362 GRYVCTVGAENKTITLDVQYKPINTQLTSTKTSACVNDSITLNCTSEAQP 1411



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 117  NGQKINWQXKGDKTIPCINDSLVDKCRTSSXP 22
            N + IN Q    KT  C+NDS+   C + + P
Sbjct: 935  NYKAINTQLATTKTSACVNDSITLNCTSEAQP 966



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 117  NGQKINWQXKGDKTIPCINDSLVDKCRTSSXP 22
            N + IN Q    KT  C+NDS+   C + + P
Sbjct: 1107 NYKPINTQLATTKTSACVNDSITLNCTSEAQP 1138



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 105 INWQXKGDKTIPCINDSLVDKCRTSSXP 22
           IN Q    KT  C+NDS+   C + + P
Sbjct: 767 INTQLTSTKTSACVNDSITLNCTSEAQP 794


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
 Frame = +3

Query: 462  SPGKTRTASHQAYCQCGCGASXQSDLRHFWRRYAKVIPRPASSPYAHAVYAAKSLPAAPV 641
            +P + +T +  +YCQ  C      D R+   R    I    +  Y H       LP  P+
Sbjct: 1075 APPRLQTIN-TSYCQAACNNENVCDDRNKENR----IEEHLTQAYLHEQTLVSVLPVDPL 1129

Query: 642  IHSGGYLHPLMP*RTCQASKSPFXVGKSP--VXSRGP 746
             +  GY H  +  R  Q  + P+     P  + + GP
Sbjct: 1130 KNMEGYQHRSVQERLPQQYRQPYIRQPKPHHIQAMGP 1166


>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +2

Query: 503 PVRMRREXPIRLTAFLAALCQSDSTARVVAIRPRGVRCKKPSCGTSNTFWRLPSST 670
           P +  RE P     F   + Q     R    RP      +PS GTS  + R P  T
Sbjct: 214 PRQFAREVPPEPRPFAQEVPQEAPAPRRYGTRPTSAASTQPSLGTSPRYMREPQGT 269


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +2

Query: 503  PVRMRREXPIRLTAFLAALCQSDSTARVVAIRPRGVRCKKPSCGTSNTFWRLPSST 670
            P +  RE P     F   + Q     R    RP      +PS GTS  + R P  T
Sbjct: 1795 PRQFAREVPPEPRPFAQEVPQEAPAPRRYGTRPTSAASTQPSLGTSPRYMREPQGT 1850


>SB_26004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 623 PSCGTSNTFWRLPSSTNAVTYMPGKQVTIXGGEIARKXKGP 745
           P CG   T W +P++ N     PG         I+R+   P
Sbjct: 31  PDCGRLVTLWSIPANINRRLKSPGLSAAAANSPISRRLIRP 71


>SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +1

Query: 343 GGTVIYS---QYDEKAGQLIYR*THLSDAARAPYPTYGSVSLVVLVRREQRRIRHIASAD 513
           GG V YS   +YD   G+L+ R   L +   +     GS  L + +     + R I   D
Sbjct: 80  GGRVTYSTVDEYDALDGELVCRVLQLMNLTDSQLSQRGSEKLELAILSFFEQFRKIYVGD 139

Query: 514 AARATNPTY 540
            A+ T+  Y
Sbjct: 140 QAQKTSKVY 148


>SB_28583| Best HMM Match : C2 (HMM E-Value=2.7e-17)
          Length = 539

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 482 SVASGILPVRMRREXPIRLTAFLAALCQSDSTARVVAIRPRGVRCKKPSCGTSNT 646
           SV+S   PV++RRE  IR    L ++ +   +A    + PRGV  + P+     T
Sbjct: 21  SVSSHSEPVKLRRESSIR--GSLRSIQEKLVSASTETLTPRGVTFQSPAFSIPKT 73


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 349 TVIYSQYDEKAGQLIYR*THLSDAARAPYPTYGSVSLVV 465
           T++++ Y   A  L++  TH +    APY TY S  L++
Sbjct: 197 TLMHAPYYTYACNLLHTCTHTTTLTHAPYFTYASTLLLL 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,123,352
Number of Sequences: 59808
Number of extensions: 555250
Number of successful extensions: 1214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)