Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001267-1|BAA91590.1|  639|Homo sapiens protein ( Homo sapiens ...    32   2.0  
AC093727-1|AAX81992.1|  639|Homo sapiens unknown protein.              32   2.0  

>AK001267-1|BAA91590.1|  639|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10405 fis, clone NT2RM4000496, weakly similar to
           SAP1 PROTEIN. ).
          Length = 639

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = +3

Query: 435 SDLRFGISGSPGKTRTASHQAYCQCGCGASXQSDLRHFWRRYAKVIPRPASSPYAHAVYA 614
           +D+   I  SPG     +  +Y    CG+     L H      +  P    S Y H+ Y+
Sbjct: 22  ADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSL-HAGLPSQEYAPGYNGS-YLHSTYS 79

Query: 615 AKSLPAAP-----VIHSGGYLHPLMP 677
           ++  PA P      +HS G L P  P
Sbjct: 80  SQPAPALPSPHPSPLHSSGLLQPPPP 105


>AC093727-1|AAX81992.1|  639|Homo sapiens unknown protein.
          Length = 639

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = +3

Query: 435 SDLRFGISGSPGKTRTASHQAYCQCGCGASXQSDLRHFWRRYAKVIPRPASSPYAHAVYA 614
           +D+   I  SPG     +  +Y    CG+     L H      +  P    S Y H+ Y+
Sbjct: 22  ADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSL-HAGLPSQEYAPGYNGS-YLHSTYS 79

Query: 615 AKSLPAAP-----VIHSGGYLHPLMP 677
           ++  PA P      +HS G L P  P
Sbjct: 80  SQPAPALPSPHPSPLHSSGLLQPPPP 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,163,867
Number of Sequences: 237096
Number of extensions: 2537957
Number of successful extensions: 4938
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)