Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3552|AAF46963.1|  114|Drosophila melanogaster CG13545-P...    33   0.33 
AY122184-1|AAM52696.1|  240|Drosophila melanogaster LD41157p pro...    30   4.1  
AE014298-1140|AAF46339.1|  272|Drosophila melanogaster CG1583-PA...    30   4.1  

>AE013599-3552|AAF46963.1|  114|Drosophila melanogaster CG13545-PA
           protein.
          Length = 114

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 558 YAKVIPRPASSPYAHAVYAAKSLPAAPVIHSGGYL 662
           Y+  IPR  S+  A +VYAA S+ AAP ++S  Y+
Sbjct: 59  YSAAIPRAYSAYAAPSVYAAPSVYAAPSVYSSSYV 93


>AY122184-1|AAM52696.1|  240|Drosophila melanogaster LD41157p
           protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 598 AYGDDAG-RGITLA*RRQKCRKSDWXLAPHPHW 503
           ++ D++G RG     RR++ + SDW +AP+  W
Sbjct: 82  SHTDESGVRGAAAVHRRERRQLSDWLIAPNTRW 114


>AE014298-1140|AAF46339.1|  272|Drosophila melanogaster CG1583-PA
           protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 598 AYGDDAG-RGITLA*RRQKCRKSDWXLAPHPHW 503
           ++ D++G RG     RR++ + SDW +AP+  W
Sbjct: 114 SHTDESGVRGAAAVHRRERRQLSDWLIAPNTRW 146


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,975,386
Number of Sequences: 53049
Number of extensions: 788044
Number of successful extensions: 1792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)