Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.60 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 573 PRPASSPYAHAVYAAKSLPAAPVIHSGGYL 662
           P P   P    VYA+  L AA V H G  L
Sbjct: 126 PTPNGHPSTPIVYASCKLQAAAVDHQGSVL 155


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 650 WRLPSSTNAVTYMPGKQVTIXGGEIARK 733
           W +  + N   +MPG+ ++  GGE  R+
Sbjct: 581 WMMGGNANR-NFMPGRGISKFGGEDVRE 607


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 523 LAPHPHWQYA*CDAVRVLPGLPEIPNRRSDK 431
           +AP+P+W Y   + V+   GL  +   + DK
Sbjct: 103 IAPYPNWSY---NDVKYCDGLTSVYRMQVDK 130


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 640 TGAAGRLFAAYTAWAYGD 587
           TG  GRL   Y  W++ +
Sbjct: 98  TGKGGRLLKPYPDWSFAE 115


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 586 DAGRGITLA*RRQKCRKSDWXLAPHP 509
           D  R  T    RQK  +  W + PHP
Sbjct: 123 DNARPHTSLVTRQKLLELGWDVLPHP 148


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  GHELVRHLSTSESLMHGMVL 82
           GH +++ L TS  LM+G  L
Sbjct: 270 GHAILKGLKTSIILMNGTTL 289


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 586 DAGRGITLA*RRQKCRKSDWXLAPHP 509
           D  R  T    RQK  +  W + PHP
Sbjct: 245 DNARPHTSLVTRQKLLELGWDVLPHP 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,282
Number of Sequences: 438
Number of extensions: 4843
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)