Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0392.Seq
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65690.1 68418.m08266 phosphoenolpyruvate carboxykinase [ATP]...    29   4.6  
At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR...    29   4.6  
At3g58930.1 68416.m06567 F-box family protein contains F-box dom...    28   6.0  

>At5g65690.1 68418.m08266 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 670

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +3

Query: 450 GISGSPGKTRTASHQAYCQCGCGASXQSDLRHFWRRYAKVIPRPASSPYAHAVYAAKSLP 629
           G+SG+ G T   S +   Q    AS  S  R    +  +  P  A+   AH      SLP
Sbjct: 79  GVSGTSGPTTPVSSETMLQ-SVSASLASLTRETGPKLIRGDPTSAAK-VAHVPVTPTSLP 136

Query: 630 AAPVIHSG 653
           AA V  SG
Sbjct: 137 AADVSDSG 144


>At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1072

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 308 NIYRLSFVSCLVMAMPCAWRSNSI 237
           N+  L +++CLV  MPC +R N +
Sbjct: 664 NLPGLDYLACLVRCMPCEFRPNDL 687


>At3g58930.1 68416.m06567 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 482

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = -2

Query: 297 TLFCILPGHGDALRMAVEFNLNVLDKSMRDR---IDISL--LKEKGVIAPGEYFVSVAVN 133
           +L CI   H D +   +    NVL + + D    ID S    +E   + P E FVS  + 
Sbjct: 88  SLKCITGIHPDHVNRWI---CNVLQRGVSDLDLFIDFSYEDTQEDEDMLPQEMFVSKTLV 144

Query: 132 NNKISNGQKINWQ-XKGDKTIPCINDSLVD 46
             KI N + ++W   KG  ++P +    +D
Sbjct: 145 KLKIRNDRCVDWWCGKGGTSLPMLKSLYID 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,605
Number of Sequences: 28952
Number of extensions: 358690
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)