Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   0.58 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   3.1  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.5  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 123 CVLCTKKYDQYDDYVIH--INECTMNVKLQHFVCPICHEMYTEKLLI 257
           C +C + +    +   H  ++     +++ H  CP+CH+ +T  L++
Sbjct: 165 CKICGRAFTTKGNLKTHMGVHRAKPPMRVLH-QCPVCHKKFTNALVL 210


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 221 WAYKMLKFHIHCALVDMYNXXXXXXIFFSAEYT 123
           W Y   + HIHC++    +        FS E T
Sbjct: 84  WVYYESRAHIHCSVKSESSQAAKYGGCFSGEST 116


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 380 QIGWSVEDIYQEIDFKPAEQKSTPTSSPLKNFF 478
           ++ W  ++  QEI+      + +PT   L  FF
Sbjct: 358 ELSWMNDEAQQEINMFLKATEMSPTDISLVGFF 390


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -1

Query: 352 TVYREINTVLAIISDTGFWRIV 287
           T+YR + T++ +++D   W ++
Sbjct: 208 TLYRILTTMMEMVNDIFGWTLI 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,118
Number of Sequences: 336
Number of extensions: 4016
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)