Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    30   0.37 
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    28   1.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.4  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   4.5  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   4.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   7.9  

>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 132 CTKKYDQYDDYVIHINECTMNVKLQHFVCP 221
           CT  +D + DY   I   T++  ++ FVCP
Sbjct: 161 CTNSWDIFRDYFEFIGTSTLSPSVEEFVCP 190


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 344 IYSKAKPKSARRQIGWSVEDIYQEIDFKPAEQKSTPTSSPLKNFF 478
           IY+  KP  A+R +   + DIY       +    T TS  +KNF+
Sbjct: 76  IYASVKPTEAKRAVKLILNDIYSSNPMIRSLALRTLTSVNIKNFW 120


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 357 PSPSQPDVRLVGQSKIFIKKLISNLLSRNRHRPQVH*RTFSLNWGMSE 500
           P  S  D  LV    +F KK  S  + R+  RP++   TFSL++   E
Sbjct: 531 PGGSIQDCFLVN-GVLFSKKASSKSMDRSLRRPRIALLTFSLDYACDE 577


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 311 TDNGEDCVDFPIYSKAKPKSARRQIGWSVEDIYQEIDFKPAEQKST-PTSSPLKNFFSKL 487
           +DN E   + P+  + +PKS      ++++   +E      E KS+    S   N F KL
Sbjct: 58  SDNDESMAEMPLEPQVEPKSIEN--NYTLKKKNEEGFLSQQENKSSNQNPSKANNLFDKL 115

Query: 488 G 490
           G
Sbjct: 116 G 116


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +2

Query: 353 KAKPKSARRQI----GWSVEDIYQEID 421
           K+K KSA  +I    GW +ED+ QEID
Sbjct: 127 KSKDKSAHSKIDKEFGWLLEDLDQEID 153


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 444 DFCSAGLKSIS**ISSTDQPI*RRADLGLALLYIGKSTQSSPLSV 310
           DFC+   ++    ISS +    + + LGL + YIG S +S+ L +
Sbjct: 167 DFCAVNTETSR--ISSLNLAWQQSSSLGLGISYIGMSIKSNKLHI 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,418
Number of Sequences: 5004
Number of extensions: 65808
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)