Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719...    32   0.51 
12_01_0862 + 8161117-8163913,8164000-8164019                           29   4.8  
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304...    29   4.8  
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    29   4.8  

>01_06_1214 +
           35470688-35471340,35471617-35471701,35471750-35471906,
           35472086-35472189
          Length = 332

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 296 PKTSITDNGEDCVDFPIYSKAKPKSARRQIGWSVED 403
           P+TS  + G+D  DFP     KP+  RR    +VED
Sbjct: 52  PRTSHENLGDDTPDFPTTKPRKPRRGRRSEAAAVED 87


>12_01_0862 + 8161117-8163913,8164000-8164019
          Length = 938

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 377 RQIGWSVEDIYQEIDFKPAEQKSTPTSSPLKNFFSK 484
           +QI + VEDI  E  +    +K TP+   LKNFF K
Sbjct: 78  QQIAFEVEDILDEFVYYFG-RKETPSVELLKNFFRK 112


>06_01_0424 +
           3041296-3041860,3042701-3042786,3042858-3043147,
           3043225-3043285,3043773-3043868,3044448-3044603,
           3044811-3044987
          Length = 476

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 201 LQHFVCPICHEMYTEKLL 254
           LQHF CPI HE+  + L+
Sbjct: 409 LQHFTCPISHEVMNDPLM 426


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -3

Query: 479 RKSSSMDLRSVSISAQQV*NQFLDKYLRLTNQSDVGLTWAWLYCI*GNQ 333
           R    + ++ +S+ ++Q   +FL++ + ++N S   L   + YC+ GNQ
Sbjct: 65  RNGKLVAVKVLSLESRQGAKEFLNELMAISNVSHENLVKLYGYCVEGNQ 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,323
Number of Sequences: 37544
Number of extensions: 367864
Number of successful extensions: 740
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)