Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41710| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        31   1.2  
SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        29   3.7  
SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     29   3.7  
SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                28   8.5  

>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 604  FIIKCTIN*QHIPHVSSFIMPIPNMIHMRHALNIDSLIPQFREKVLQ 464
            F+ KC     +IP +S +  P+P++   RH  ++D   P ++ K+ Q
Sbjct: 929  FMYKCLNGHYNIP-LSHYFKPLPSLRSSRHRSSLDIATPLYKTKLFQ 974


>SB_41710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 120 SCVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMY 239
           +C  C K+    + +V+HI  CT N +    +CPIC E Y
Sbjct: 3   TCDRCKKQVPGVN-FVMHIAHCTRNTE----ICPICGEFY 37


>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 604 FIIKCTIN*QHIPHVSSFIMPIPNMIHMRHALNIDSLIPQFREKVLQ 464
           F+ KC     +IP +S +  P+P++   RH  ++D   P ++ K+ Q
Sbjct: 520 FMYKCLNGHYNIP-LSHYFKPLPSLRSSRHRSSLDIATPLYKTKLFQ 565


>SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 440 KSTPTSSPLKNFFSKLGNE*VYVQCMPHMYHVWDGHYK 553
           KS P SS LK  F++   +  Y  CMP++  + DGH K
Sbjct: 211 KSFPASSTLKKIFNRNTLKISY-SCMPNVKQLIDGHNK 247


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 120 SCVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMY-TEKLL 254
           +C+ C   +    +Y +H N+C       H+ C  C ++Y T KLL
Sbjct: 302 TCIQCQVTFSTELEYTVHKNDCN-----SHYSCDECGKVYKTAKLL 342


>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 305 SITDNGEDCVDFPIYSKAKPKSARRQIGWSVEDIYQEIDFKPAEQ--KSTPTSSPLKN 472
           S +   E  ++  + +  +    R  +  +V+D+  E++ KP EQ  + TP+S  L N
Sbjct: 41  STSGTAEQTMEGSVENSQEKSPERPSLQENVDDVKMEVNAKPGEQETRETPSSETLSN 98


>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 120 SCVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMY-TEKLL 254
           +C+ C   +    +Y +H N+C       H+ C  C ++Y T KLL
Sbjct: 234 TCIQCQVTFSTELEYTVHKNDCN-----SHYSCDECGKVYKTAKLL 274


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 326 DCVDFPIYSKAKPKSARRQIGWSVEDIYQEIDFKPAEQKSTPTSSP-LKNFFSKLGN 493
           DCVD    S A  K A R   W V  I +            PTS+P    F+SK G+
Sbjct: 109 DCVDIEPRSWAAGKWAVRPCSWRVGYICESAALPIGPTAVAPTSNPDCPRFYSKYGD 165


>SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 419 DFKPAEQKSTPTSSPLKNFFSKLGNE*VYVQCMPHMYHVWDGHYK 553
           +F     K  P SS LK  F++   +  Y  CMP++  + DGH K
Sbjct: 776 EFLKLVDKFFPASSTLKKIFNRNTLKISY-SCMPNVKQLIDGHNK 819


>SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 138

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 141 KYDQYDD-YVIHINECTMNVKLQHFVCPICHEMYTE 245
           K  QY D Y +  N   +NV L H   P+CH  Y E
Sbjct: 2   KSPQYPDPYPLRRNGGYLNVILPHRRAPLCHACYRE 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,770,877
Number of Sequences: 59808
Number of extensions: 455468
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)