Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0389.Seq
         (862 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101767-1|AAI01768.1|  582|Homo sapiens zinc finger protein 319...    30   9.4  
BC093919-1|AAH93919.1|  582|Homo sapiens zinc finger protein 319...    30   9.4  
AB037809-1|BAA92626.1|  599|Homo sapiens KIAA1388 protein protein.     30   9.4  

>BC101767-1|AAI01768.1|  582|Homo sapiens zinc finger protein 319
           protein.
          Length = 582

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 CVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMY 239
           C +C K +DQ  + + H  +C      + F CP+C++ Y
Sbjct: 401 CPVCQKGFDQSAELLRH--KCLPGAAERPFKCPVCNKAY 437


>BC093919-1|AAH93919.1|  582|Homo sapiens zinc finger protein 319
           protein.
          Length = 582

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 CVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMY 239
           C +C K +DQ  + + H  +C      + F CP+C++ Y
Sbjct: 401 CPVCQKGFDQSAELLRH--KCLPGAAERPFKCPVCNKAY 437


>AB037809-1|BAA92626.1|  599|Homo sapiens KIAA1388 protein protein.
          Length = 599

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 CVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMY 239
           C +C K +DQ  + + H  +C      + F CP+C++ Y
Sbjct: 418 CPVCQKGFDQSAELLRH--KCLPGAAERPFKCPVCNKAY 454


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,061,989
Number of Sequences: 237096
Number of extensions: 2268819
Number of successful extensions: 3935
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3935
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)